Entry |
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Name |
(GenBank) Exosome complex component Rrp42
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KO |
K12589 | exosome complex component RRP42 |
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Organism |
loki Candidatus Lokiarchaeum sp. GC14_75
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:loki00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lokiarch_20510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:loki03019]
Lokiarch_20510
Messenger RNA biogenesis [BR:loki03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Lokiarch_20510
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Lokiarch_20510
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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AA seq |
274 aa
MMDVRRIISRIEKNYIKSNLKKEERIDGRGLWDYRDFTIEADIIASAEGSADVLLGETRI
MTGLKYEIGVPFPDLPDAGVCTLMAELLPLASPLFERGPPSEESIELARVVDRGIRHADC
VQTKKLCIKEKEAVYILFVDMYVLNHAGNLIDTGAISAITTLLSCHLPEGKMGEDGLEWT
GNYLTADDIINELPIAITYGKIDDMIFVDPNLPEELVSEGRISISVTENKITSIQKSGVA
TFSIDEIKMLGKKSLELGKKLRKELNLSQYKYSK |
NT seq |
825 nt +upstreamnt +downstreamnt
atgatggacgttagacgtattatatcaaggattgaaaaaaattacattaagtcaaatttg
aaaaaagaagaaagaattgacggtagaggcctttgggattatcgtgattttactattgag
gcagatattattgcttctgctgaaggatctgctgatgtgttattaggggagacaaggatc
atgactgggttaaaatatgaaatcggagtaccatttccagatctcccagatgcgggtgta
tgtactttaatggcagaattacttcctttagcatcaccattatttgaaagaggtccacca
agtgaggaatctattgaattagctcgggtagtagacagaggaattcgtcatgcagattgt
gttcagactaaaaaattatgtattaaagaaaaagaagctgtttacattctatttgttgat
atgtacgtattgaatcatgctggaaatttaattgatacaggagcgattagtgcaataaca
actctactttcttgtcatctccccgaagggaaaatgggcgaagatggtctcgaatggaca
ggaaattacttaactgcggatgatattataaatgagttacctatcgcaataacatatgga
aagattgacgatatgatttttgttgatccaaatctacctgaagaattagtatctgaggga
agaatttctatatctgtcactgaaaataaaataacatcaattcagaaaagtggtgttgcg
acattttcaattgacgagattaaaatgcttggtaaaaaatcactggaacttggcaaaaaa
ctcagaaaggagttaaatctttcacaatataaatactctaaataa |