Paucilactobacillus oligofermentans: LACOL_1515
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Entry
LACOL_1515 CDS
T06755
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lol
Paucilactobacillus oligofermentans
Pathway
lol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LACOL_1515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lol03400
]
LACOL_1515
Enzymes [BR:
lol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LACOL_1515
DNA repair and recombination proteins [BR:
lol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LACOL_1515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
SNF2-rel_dom
RecG_dom3_C
IstB_IS21
UB2H
Motif
Other DBs
NCBI-ProteinID:
CUS26845
UniProt:
A0A0R1RLQ3
LinkDB
All DBs
Position
I:complement(1553920..1557462)
Genome browser
AA seq
1180 aa
AA seq
DB search
MKLEDFLVEMPEFINIEAGIKGRQRQLITGISGSAETLLLSSIHRQLQQSQLIVTDDLSH
MEQITNDLLNRLSDDQVFQFPVEENLAVEVATSSPEFRLQRVLALDALLSDHPVVVVTST
SGLKRLLPTTEVFKEARLQIKVGSDINLDQSRTQLSSMGYQLEKMVIRPGDFAIRGSILD
IYPLNTENPVRIDLFDTEVDSLRYFDATTQRSIENVEQVSVLPATDFVISETEFNRIHQS
LTKQMTATAKDLSDDQRQQLEQNISPTLKALTHQQIIPELIEFSNDVYTDKTSILDYLDE
NGVIVTEDYPRILTKEEDINEGQQAWLEAQVASQKLLSSTAMGHKVSDLITGDQHAQCFF
ALFQKGMGKVSFSQITNIMARNMQQFFGQMPVLKAEIERFNQQQRTTIILANSADRLDKI
ENTLNDFGISITLVENDELKPGIAQLVNDGLQNGFELPEANLVVITEAELFKTVQKKRAR
RQTLENAERIKSYTDLKPGDYVVHVNHGIGQFTGIETIESQGVKQDYIAIEFQKNAKIFV
PVTQLNLVQKYVSSESKTPKINKLGGSEWAKTKRSVAAKIEDIAQELVALYAAREAEVGF
NFPKDDDYQNQFENDFPYTETPDQLRSSSEIKRDMEGTKPMDRLLVGDVGYGKTEVALRA
AFKAIEAGKQVAFLVPTTILAQQHFDSMQRRFEGYPVNVAMMSRFRTRKQLTETEEQLTS
GECDIVVGTHRILSKDVHFKDLGLVIVDEEQRFGVKHKERLKQLKSSVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPVGRFPIQTYVMEQNAGALRDAVMREMGRGGQVFYLHNRVAD
IEKTVAEISMLVPEARVGYIHGQMTEVQLESVLYDFIRGEYDVLVTTSIIETGVDIPNVN
TLFVEDADRMGLSQLYQIRGRIGRSNRVAYAYFMYQQNKVLTEVSEKRLSAIRDFTELGS
GFKIAMRDLSIRGAGNLLGQQQHGFIDSVGYDLYSQMLADAVAVKRGEKVVVKTDTEIDV
GIEAYLPSEYIDDQRQKMELYKSIRSLESEDRLLDLESDLIDRFGDFPVQVENLLAVGRL
KIFADLAQLDKIRQQNGYLYVTLSENATEKITARELLKDLTVTGFKATIGDEAGKTRIKL
VIQPKMTQKDWMEQLTVFVKALSEHFEGPGEQNDEESTTA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattagaagattttttggttgaaatgccggaatttatcaacattgaagctggaatt
aaaggacgacaacgacaactgattaccggaatatctgggtcggctgagacgttattatta
agttcaattcatcgtcaattgcaacagtcgcagctaattgtgaccgatgatttgagtcat
atggaacaaattactaatgatttacttaatcggttgtctgatgatcaagtttttcaattt
ccagttgaagaaaacttagcggtggaagtagcaaccagttcaccggaatttagattgcaa
cgggtcctagctttggatgcgttattaagtgaccacccagtagtagttgtcacttcaacc
tcgggcctcaagcgattattgccaacgactgaggtctttaaagaggctcgactccaaatt
aaagttggttctgacattaatttagatcagtcgcgaacccagctaagttcaatgggctat
cagcttgaaaagatggttattcgaccgggggactttgccattcgtgggtcaattttagat
atttatccactgaacactgaaaatccggtccggattgatttatttgatacggaagttgat
tcattaagatactttgacgccacgacccaacgaagtattgaaaatgttgagcaggtctca
gttttgccggcaactgattttgtaattagtgaaaccgaatttaatcgtattcaccaatca
ttaaccaaacaaatgacagcaacagctaaagacttgagtgatgatcagcgccaacagtta
gaacaaaatatttcacccacgttaaaagcattgactcatcaacaaataattcccgaatta
atcgagtttagtaatgatgtttatactgataaaacctcgattttagattatttggatgaa
aatggggtaatcgtaacggaagattacccacgaattttgactaaagaagaagatattaat
gaaggacaacaggcatggttagaagctcaagttgccagtcaaaagttattgagtagcacg
gcgatgggacacaaggtatcagacttaatcactggcgatcaacatgctcagtgtttcttt
gcgttatttcaaaaaggcatgggtaaagttagtttttcacaaatcaccaatattatggca
cgaaatatgcaacaattttttggccaaatgccagtattgaaagctgaaattgaacgattt
aaccagcaacaacgaaccacgattattttagctaacagtgccgaccggttggataagatt
gaaaacaccctgaatgattttggcatttcaattacgttagttgaaaatgatgagttaaag
ccaggcattgctcaattagtgaatgatggcttacaaaatgggtttgaattacccgaagct
aacttagttgtaattaccgaagctgaattatttaaaacggtgcaaaaaaagcgcgcgcgg
cgacaaacgctggaaaatgctgaacgaattaaaagttacacggacttaaagcccggcgat
tatgtggtacatgtcaatcacgggattggtcagtttactgggattgaaacgatcgaaagt
caaggcgttaaacaagattatatcgcgattgagtttcaaaaaaatgccaagatttttgta
ccggtgacgcaacttaacttagttcaaaagtacgtgtcttcggaatctaaaacgcctaaa
atcaataagctaggtggctcggaatgggctaaaacgaagcgcagtgtcgcggccaaaatt
gaggatattgcacaagaattggtagcactatatgcggcccgtgaagcagaagttggtttt
aactttcctaaagatgatgattatcaaaaccaatttgaaaatgattttccatatacagaa
acgccagatcaattacgaagtagttccgaaatcaagcgggatatggaaggtacgaaaccg
atggatcgtttgttggtgggggatgttggttatggtaaaacggaagtggccttacgagct
gcttttaaagcgattgaagctggtaaacaagtcgcctttttggtgccgacgaccatctta
gcgcaacaacattttgattccatgcagcgtcgattcgaaggatatccagtgaatgttgcg
atgatgtcacggtttagaacgcgaaaacaattaacagaaactgaggaacaattgacttct
ggtgaatgtgatattgtagttggaactcatcgaatcttatcgaaggatgtccattttaaa
gatttaggactggtaattgttgatgaagaacaacgcttcggagtaaaacataaggaacga
ttgaagcaattaaagagttcagttgatgtactgacgctaacagcaaccccaatcccccga
acgttacacatgtcgatgttgggcgttcgtgatttatcggttattgaaacaccaccagtt
ggtcggttccccattcagacgtatgtgatggaacaaaatgccggggctttacgtgatgca
gtgatgcgtgaaatgggtcgtggtggtcaggtgttttacttacacaatcgggtggccgat
attgaaaaaacggtcgctgaaatttcgatgttagtaccggaagcacgggttggttatatt
cacggacaaatgactgaagttcagttagaatcagtgttatatgattttatccgtggcgaa
tatgatgttttagtgacgacctcgattattgaaacgggtgttgatattcctaatgtgaat
acattgtttgttgaagatgctgatcggatgggattatctcaactctatcaaattcgtggt
cgaatcggccggagtaatcgggtggcctatgcttactttatgtaccaacaaaacaaggtc
ttgactgaagtgagtgaaaaacgactctctgcaatccgtgattttacggaattgggatcg
ggatttaaaattgcgatgcgcgatttgtcaattcggggcgcaggtaatttattaggtcaa
caacaacatggtttcatcgattcagtggggtatgatttatattcacagatgttagcggat
gcggtcgctgttaagcgcggtgaaaaagtggttgttaaaactgataccgagattgatgtc
ggaattgaagcttatttaccatccgaatatattgatgatcaacgccaaaaaatggaatta
tataaaagtattcgttcattggaaagcgaagatcggttattggatctagaaagtgatctg
attgaccgctttggtgatttccctgtgcaagttgaaaatctcttagccgttggtcgattg
aaaatttttgctgatttagcgcaattagataagattagacaacaaaatggctatttatat
gtaactttatcggaaaatgccacagagaaaataacggcccgtgaattattgaaagattta
acggttactggatttaaagcaaccattggggatgaagcaggtaaaacccggattaagtta
gtaattcaaccaaaaatgacgcaaaaagactggatggaacaattgaccgtctttgtaaaa
gccctcagcgaacattttgaaggcccaggagaacaaaacgatgaagaatcaacgactgca
taa
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