Lacticaseibacillus pabuli: PQ472_10360
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Entry
PQ472_10360 CDS
T09936
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lpab
Lacticaseibacillus pabuli
Pathway
lpab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQ472_10360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpab03021
]
PQ472_10360
03400 DNA repair and recombination proteins [BR:
lpab03400
]
PQ472_10360
Enzymes [BR:
lpab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQ472_10360
Transcription machinery [BR:
lpab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQ472_10360
DNA repair and recombination proteins [BR:
lpab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQ472_10360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WDF82282
UniProt:
A0ABY7WTF1
LinkDB
All DBs
Position
complement(2105496..2109107)
Genome browser
AA seq
1203 aa
AA seq
DB search
MAGHLVNYGKHRTRRSFSRIKEVLDLPNLIEIQTNSYQWFLDEGLKEMFDDIMPITDFQG
NLSLEYVDYQLLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGIYFNSAVDKNSRTTWGTTFIPNRGAWLEFETDAKDIS
YVRIDRTRKIPMTELVRALGFGSDQEIIDMFGDNDSLMNTLEKDVYKDTNDSRTDESLKD
IYERLRPGEPKTADSSRSLLYARFFDPKRYDLAKVGRYKVNKKLQLKNRLLGLTIAETLA
DPDTGEVIVKKGEKITREIMDTLGEYLDRDDFKTVTYQPNDDAVLKDPIDLQVIKVYSQI
TPDKEVNLIGNGNIDKKVKHVTPADILAGVNYFLNLQEGIGNTDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDVTTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA
VVNPYGFIETPYRRVSWSDHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDSTVLAR
HKDDNIEVSPERVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIKPHA
PLVGTGMEYKAAHDSGTAIQAKFAGTVSFVDAKTIKVRREDATEDTYHLMKFRRSNAGKN
YNQTPIVRLGDKVDAGEIIADGPAMDNGELALGQNPIIAFMTWNMYNYEDAIVLSEKLVK
EDAYTSIHIEELESEARDTKLGPEEVTREIPNVGDEALKDLDEFGIVRIGAEVHDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKVFTREAGDELSP
GVNMMVRVYITQKRKIQVGDKMAGRHGNKGTVSIVVPEEDMPYLPDGTPVDICLSPMGVP
SRMNIGQVLELHLGMAARNLGIHVATPVFDGAREDDLWDTVKEAGMPSDGKYILYDGRTG
EPFENRVSVGVMYYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMK
FLDAAHQEIELRDMDDDDDDVVNVDALAKFAAEQEEKKAAAEGDQATSGDNKDSKDSKIQ
DKE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacacttagtcaactacggcaaacaccgcacacgacgttccttctcccgtatc
aaggaggttctggatctcccaaacttgattgagattcagacgaattcttaccagtggttc
ctcgacgaaggcttgaaggaaatgttcgacgatatcatgccgatcacggacttccagggt
aacctgagtcttgagtacgtcgactatcagttacttgaaccaaaatacacagtggaagaa
gcgcgtcagcacgacgcaaactactccgcaccattacacgtaacactgcgtttgacgaac
cacgaaactggcgaaatcaagtctcaggacgtgttctttggtgacttcccactgatgacc
gaacagggtactttcattattaatggtgcggaacgagttatcgtttcacaacttgttcgt
tcacctgggatttacttcaacagtgctgttgataagaacagccggaccacatggggaacg
acattcattcctaaccgtggggcatggctcgaatttgaaactgacgcgaaggatatttcc
tacgttcgtattgaccggacccgtaagattccaatgaccgaacttgttcgtgcccttggt
ttcggttctgatcaggaaatcatcgacatgttcggtgacaacgattctttgatgaacact
ctggaaaaggatgtttacaaggataccaatgattcccgcactgacgaatcgttgaaggat
atctacgaacgcctacgccctggcgaaccaaagaccgctgattccagccgttccttgctg
tacgcgcgtttctttgatccaaagcgttacgacctcgccaaggttggtcgttacaaggtt
aacaagaaactccaacttaagaaccgtttgcttggcctcaccattgctgaaacactcgct
gacccagatactggtgaagtgattgtgaagaagggtgaaaagattacccgcgaaatcatg
gatactctgggcgaatacctggaccgcgatgacttcaagacggtaacttaccagccaaac
gacgacgctgtattgaaggacccaatcgacttgcaggttatcaaggtttactcccagatc
acacctgataaggaagttaacttaatcggtaacggcaacatcgataagaaggttaagcac
gtcacacctgcagatattcttgccggcgtgaactacttcctgaaccttcaagaaggcatt
ggtaacacggatgatattgaccatttgggtaaccgccggattcgctccgtcggtgaactc
ttgcagaaccagttccgcattggtctgtcccgtatggaacgtgtcgttcgcgaacgcatg
tccatccaggatgtcaccaccgttaccccacagcagttgattaacattcgccctgttgtg
gcttcaattaaggaattcttcggttcatcccagctgtcacaattcatggaccagaccaac
ccactcggggaactcacgcacaagcgtcgtctctccgcccttggacctggtggtttgacg
cgtgaccgtgccgggtatgaagttcgagatgttcactacacccattacggccgtatgtgt
cctatcgaaacccctgaaggtcctaacattggtctgattaactctctggcgagctatgcg
gttgtgaacccatatggcttcattgaaaccccataccgtcgtgttagctggtcagatcac
aaggttaccgacaagatcgattacctgaccgctgatgaagaagataactacatcgtggca
caagcgaactcaccactgaacgacgatggttcattcgttgacagtaccgttctggcacgt
cacaaggatgataacatcgaagtttcacctgagcgcgttgactacatggacgtttcacct
aagcaagtagttgctgttgcgaccgcctgcattcctttcttggaaaacgatgactccaac
cgtgccctcatgggtgctaacatgcagcgtcaggctgtgccactgatcaagccacacgcc
ccacttgttgggactggtatggaatacaaggctgcacatgactccgggactgccatccag
gctaagttcgccggcacggtttccttcgttgatgccaagaccatcaaagttcgccgtgaa
gatgcaactgaagatacctaccacttgatgaagttccgtcggtctaacgccggtaagaac
tacaaccagacaccaatcgttcgcctcggcgacaaggttgatgcaggtgaaatcatcgct
gatgggccagccatggataatggggaactggcacttggccagaacccaattatcgcgttc
atgacttggaacatgtacaactacgaagacgcgattgtcctctccgaaaagctggttaag
gaagatgcttacacatctatccatatcgaggaactcgaatcagaagcccgcgataccaag
cttggacctgaagaagtgacacgcgaaattcctaacgttggggatgaagccctcaaggat
cttgacgaattcgggattgtccggattggtgccgaagtccacgacggtgacatcttggtt
ggtaaggtaacgccaaagggtgttaccgaactctccgctgaagagcgtttgctccatgcc
atcttcggtgagaaggcccgcgaagttcgcgacacctccctccgtgttcctcatggtggt
ggcggtattatccaggacgttaaggtcttcactcgtgaagccggcgacgaattgtcacct
ggtgttaacatgatggtccgcgtctacatcacccagaagcgtaagattcaggttggtgac
aagatggccggacgtcatggtaacaagggtaccgtttctatcgttgtacctgaagaagac
atgccatacctgccagatggtaccccagttgacatttgcttgtcgccaatgggtgtgcct
tcccgtatgaacatcgggcaagtgctcgaattgcatttggggatggccgcacgtaacttg
ggtatccacgttgcaacgcctgtctttgatggtgctcgtgaagatgacttgtgggatacc
gttaaggaagccggcatgccgtctgatggtaagtacatcttgtacgatggccgtactggt
gaaccatttgaaaaccgtgtctctgttggtgtcatgtactacatgaagctatctcacatg
gttgatgataagatccatgcacgttcaattggaccttactctctcgttacgcaacagcca
ctgggtggtaaagctcagtttggtggccaacgtttcggtgaaatggaagtttgggccctt
gaagcttacggggctgcttacaccttgcaggaaatcctcacttacaagtctgatgacgtt
gtgggtcgtgtgaagacctacgaagccattgtgaagggcgaaccaattcctaagcctggc
gtaccagaaagtttccgcgttcttgttaaagaactgcaggcacttggtctggacatgaag
tttctggatgctgcccatcaagaaatcgaactgcgcgacatggacgacgatgacgacgac
gtggtaaacgttgatgccctcgctaagttcgctgcagaacaggaagaaaagaaggctgct
gcagaaggcgaccaggcaacttccggcgacaataaagatagtaaagatagcaaaatccaa
gataaagaatag
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