Leishmania panamensis: LPMP_210860
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Entry
LPMP_210860 CDS
T06539
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lpan
Leishmania panamensis
Pathway
lpan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPMP_210860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpan03019
]
LPMP_210860
Messenger RNA biogenesis [BR:
lpan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LPMP_210860
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LPMP_210860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
22574908
NCBI-ProteinID:
XP_010698873
UniProt:
A0A088S975
LinkDB
All DBs
Position
21:246542..253279
Genome browser
AA seq
2245 aa
AA seq
DB search
MLYDRVNDIGSSQGEAIRYILGAVSKNTVQTTLTTLEQFCFRSVELHRYTIKATCTALLA
ARSDERALLASRLVSEALGRPNGLTLVSCALDGSSSTLTKESLTALMSSDLRLSLMKQMQ
MAMALVLGGNAMVKAAATDMLEDFNVPQAALKEDDGGVRAAALLSRQVGLAPANLDGQLA
NVCHTVALPKPKTEVKPRVSVAGVLRELGTGCVTTLADSRELLSIFPHSFTERDGAEVLA
FFASAGSAVNDSSTYASLMMASGKSSPKSMSGTTTLVNAMPLLDALCEGSSKGFNWDLVI
RMLDQLDGEPFRMKHISVIFDAYHRFQPDNEYPSVALFLGRWTNTMRQRSVLEYILRHPD
KVNRKPLTIDAPSELLPATKPPGVTAAEMDLWRSTTFMEAAVHVASRDKDFDHDVFRPAS
EKLPLLFLYSLFTGSFQGTVKHFMCIKHLLKAHCPSMDLVSQHIVPEMERRGRLSTVIGV
LSDLTEAAPERLVDALQVVFKCKSAAKRVLAESGSPRLVTAVAMCMEEAGEPSDKWLQRA
LEGKLHFRASSTENRFTVAMNIVEVAEMLQEKQLYVVSATAALNTLLASPLKEVLRSVMD
CAKALLASTDSLFPDDVENEALEFFKKMYAAGSTAAAIATVEILLKSTVPRDKQLYACIV
GIMFEETSAISFYPRKELQLFAELYGQMIAKDLLPPNQQQRAWGVLLPAVAKPANYAMEE
YGIIALEQVKPRLPDWPQYGRALRYVRDLDFRVPGIVAAINRGIKQEDTVARSGGAASAE
LGEGSPISPPSPKQPGSPNKALVAIDPAIVSAASPQSKKFTDTAAAKLHTLDIGTLVTNA
NVTAPPRVIQEQINFLIGNTDVRNLDSNATELSQLLRPEYYEYFADYLVVKRAALEPNYH
SMYIELIAKLHSKDMDRALRKATIGAVHRLLSSQKIGTDSSERILLRNLGSWLGSITLEK
NIPILQQDLHFKALLCQGIREGKLVPVVSFITRVLTSCAKSRFFCPPNPWTMAQLALLME
MYTLPHLRVTLRFELELLLKTLDQSMQDLAQYMRLHASNASTETRLRDVYDEINVNDSPD
FRVGEDESNVSAAAAVVPPAPATSSPTVPQLLRSSARPLQASAEPFQPKDKAQAPPSEVS
RVMQMLNKPIRPPISISMNWVFSTLSDPAFGNSAQRLTDHRLEIVAQLQAVVDEAVSYCM
QRSVAIAARTTEQLVLKDYARDPFPDDMLVAGDAMARSLASSLSYVMVRDELPLLLHRSM
TNLLERILAPYTPLEHKATIRDTLVARNLELCMRAVEYSVGEEAATATSRFLFDVVREKA
SAFAEQEPLPLPPDQIEAAELLRVMGETLVPSGRMPAPQREVYDDFYSCVPPVAVFTMVL
RSVEEAVSRYHSNENAAPLDFAQLDTATQKPGGPTDDAQAPVRQHLTHLMSLITEESSPY
FLSPMLNKLMSLAMSTERLTKLLNSSAKHTPAAAAAATNPDGTPNAAEDPAWQQEALRIS
SVLHQLYLRIVLRCRECCEETNRDEFTRLFLRHSHCYSFSKLTTDLIRIKILKCSEFDDA
LAKALTNGTSNYVTFAGDIITDVIIKEKLVASKDMRRTLMALDTIARTRAPRAAPAAPAQ
TLPSYVTEPPLSKIVPNQITKLLVPCDCVRPGEDEAFQKEVGQLMNDWIMVWSQKSHRYA
EKRIPSVEFVKTLQQRRMLDTAHLQTFLSLGVRYCVEYYANTMLAMERADGNITSETLVG
TRPGGPPGYRTPYTAKPFVMCDGFVELVMVLLQCCSLRNEASHDLRAETTLLRRVLDAVT
RVLTEHHNFVAKARPAPSWALAADEQFIPVFKQQPYVRLLSNLVYSLHRLEVSTTRAMST
EFTSAFHTFLRRVHPMEYPGFVFGWLEILSHRHVIPRFMNVQSMWPHYVDLLAGAMMFVK
FLIKGNRISPNGLVFYKSLLKLVLVLLHDYPRFLIAQHYPLCEAISLSCVQLLNTVLCSF
PPDKRLPEPFPHVDSNDPAMLQVLDTSVQEACIKATFTSFSVQPQLLANLEMMVTNDDAP
VRDGVLTDVLNDLTQPSAKRSLINAVVQHMAIVYLRTHDNRIPANFAKSNVLTCYRFLCS
RLNTKRRYYMLGACANQLRFPNIQTNFFANVMLNLFLPSPSVDTQTQTCVQEQITRVLAE
KTVIVQPHPWGVLNTFVELMREPKYKFWETSFIHYAPLDSMFTKLHHTVHTRLSKTGGAP
ALDGTRAESSTAVTTASGIGATLSA
NT seq
6738 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatgatcgcgtgaacgacattggcagctcgcagggggaggcgattcgctacatc
ctcggtgctgtctccaagaacactgtgcagacaacgctgacaacgctggagcagttctgc
ttccgctccgttgagcttcaccggtacaccatcaaggccacttgcacagccctgctggcc
gcgcgcagcgatgagcgggcattgttagcgtctcggctggttagcgaggcacttgggcgg
ccgaacgggctgaccctggtttcctgtgccctcgacggcagctcctcgaccctgacgaag
gagtccctcactgcgttgatgtcgagcgatctcaggctgtcacttatgaagcagatgcag
atggccatggctctcgtgcttggcggaaatgcgatggtcaaggcagcagcgacggacatg
ctggaggacttcaacgtgccacaggcagcgctgaaggaggacgatggtggcgtgcgtgct
gcggcgctcctgtcgcgtcaggtagggcttgcccccgcaaacctcgacggtcagctggcg
aatgtgtgccacacggttgcgttgccgaagccgaagacggaggtgaagccgcgcgtgagc
gtggcgggcgtcctgcgcgaactgggaacggggtgtgtgacgacgctggcggactcgcgc
gagctgctcagcatttttccgcactctttcacagagcgcgacggagccgaggtgctcgcc
ttctttgcctccgcgggctcggccgtcaacgacagcagcacgtacgcgtcccttatgatg
gcgtcggggaagagctccccaaagagtatgagcggcacgacgacgcttgtgaatgcgatg
ccgcttctcgacgcgctgtgtgagggtagctcaaagggcttcaactgggaccttgtcatc
cgcatgcttgatcagttggacggcgagccgttccgcatgaagcacatctctgttatcttt
gacgcctaccaccgcttccagccagacaacgagtacccgtcggtggcactgtttctaggc
agatggacgaacacgatgcgccagcgcagcgtactggagtatatcctgcgccaccctgat
aaggttaatcgtaagcctctcacgatagacgccccgtcggagttgttaccggcgacgaaa
ccgcccggcgtgacggcagccgagatggacctatggcgctctacgacgttcatggaggct
gccgtgcacgtggcgagtcgcgacaaggacttcgaccacgacgtgttccgccccgcctcg
gagaagctgccgctgctcttcctgtacagcctcttcacggggagcttccagggcacggtt
aagcatttcatgtgcatcaagcacctgctcaaggctcattgcccatctatggacctagtg
tcgcagcacatcgtacccgagatggagaggcggggtcgcctgagcaccgttattggtgtg
ctttcggacctgacagaggctgcgccagagcgtcttgtggatgcgctgcaggtggtgttc
aagtgcaagtctgccgcgaagcgtgtgctcgctgagagcgggagccctcgcctcgtcact
gcagttgccatgtgcatggaggaggcgggcgagccgagcgacaagtggctgcagcgcgcg
ctggagggcaagctgcacttccgcgccagctccacggagaaccgcttcaccgtggccatg
aacatcgtcgaggtggctgagatgctccaggagaagcagctctacgtggtgagcgcgacg
gcggcgctcaacaccctgcttgcctccccgctaaaggaggtgctgaggagcgtgatggac
tgcgccaaggcgctgctcgcctcgaccgattccctctttcctgacgacgtcgagaacgaa
gcgctggagtttttcaaaaagatgtacgccgctggcagcaccgcggctgccatcgccact
gtcgagatcctgctgaagagtaccgttccacgtgacaagcagctctacgcgtgcattgtg
gggatcatgttcgaagagacatctgccataagcttctacccgcgcaaggagctgcagttg
ttcgccgagttgtacggccagatgatcgcgaaggatctgctgccgccgaaccagcagcag
cgagcgtggggtgtcctcctaccagccgtcgcgaagcctgccaactatgcgatggaggag
tacggtattatcgcgcttgagcaagtgaaaccacgactgccggattggccgcagtacggt
cgcgctttgcgctacgtgcgagacttggatttccgcgttcccggcatcgttgccgccatc
aaccgtgggatcaagcaagaggacactgtggcgcgtagcggcggagcggcgtcggcggag
ctcggtgaaggaagcccaatctcgccaccgtctccgaagcagcctggctcgccgaacaaa
gcgctcgttgccatcgacccggccatcgtatcggcggcgtcgcctcagtcgaagaagttc
acggacacggcggcggcgaagctgcacacgctggacatcggtacgctcgtgacgaacgcg
aacgtgacggccccgccacgcgtgattcaagagcagatcaacttcctgattggtaacact
gacgtgcgtaatctggatagcaacgcgacggagctgtcacagctgctccggccagagtac
tacgagtactttgctgactatctggtggtgaaacgcgcagcgctggagcccaactaccac
tccatgtacattgagctgatcgcgaagcttcactcaaaggacatggatcgcgcactgcgc
aaggccactattggcgcagtgcatcgtctgctgagctcgcagaagattggcaccgactcg
agcgaacgtattctgctgcgcaacctcggctcctggctcggtagcatcacgctggagaag
aacattcctatcttgcaacaggacctgcacttcaaggcgcttctctgccagggtattcgc
gagggaaagctggtcccggtcgtctcgttcattacgcgggtcctgacaagctgcgccaag
tcgcgcttcttctgtccgccaaacccgtggacgatggcgcagttggcgctgctgatggag
atgtacacgcttccccacctgcgagtgacactgcgcttcgagctggagctactgctgaag
acgctggatcagtcgatgcaggacttggcgcagtacatgcgacttcacgcctccaacgcc
tctactgagacgcgcctgcgcgacgtgtacgacgagatcaatgtcaatgatagccctgac
ttccgtgtcggcgaggacgaaagcaatgtgtctgcggcggccgctgtagtaccacccgcg
ccagctacatcctcgccgacggtgccgcagctgctgcgcagcagcgcccgcccgctgcaa
gccagcgccgagcctttccagccaaaggacaaggcgcaggccccgccgtccgaggtgagc
cgtgttatgcagatgttaaacaagccgattcgccctccgatcagtatctcgatgaactgg
gtgttttccacgcttagcgaccccgcctttggcaacagtgctcagcgtctcaccgatcat
cggctcgagattgttgcacagctgcaggccgtggttgacgaggccgtcagctattgcatg
cagcgcagtgtcgccattgccgcccgcacgacagagcagctggtgctgaaggactatgcg
cgcgacccgtttccggatgacatgctcgtcgctggcgatgccatggcccgctcactggcg
tctagcttgagctacgtgatggtgcgcgatgagctaccgctgctcctgcaccgttcaatg
acaaacctgctagagcgcattctggccccctacacaccactggagcacaaggcgacgatc
cgtgacacactggtggcgcgtaacctagagctgtgcatgcgtgcagtggagtacagtgtc
ggtgaggaggcggcgacggctacgagccgattcctattcgacgtcgtgcgcgagaaggcg
agcgcctttgcggagcaggaacctctgccgctgccgccagatcagatcgaggccgcggag
ctgctacgcgtcatgggcgagacgctcgtgccgtctggccggatgcccgccccgcagcgg
gaggtctacgatgacttttacagctgcgtgccacctgtagcggtgttcaccatggtgctg
cgcagcgtcgaggaggcagtgtctcggtaccactcgaacgagaatgccgcgccattggac
tttgcgcagcttgacacagccacccagaagccgggcgggccgactgacgacgcacaggcc
cccgtccgccagcacctgacccatctcatgagcctcatcacggaggagtcaagtccctac
ttccttagccctatgctgaacaagctcatgtccctcgccatgtcgacggagcggctgacc
aagctgctgaacagcagcgctaagcatacgccggccgctgctgctgctgccaccaaccct
gacggcaccccaaacgcggcggaggaccctgcgtggcagcaggaggccctgcgcatttcc
tcagtgttgcatcagctgtacctgcgcattgtgctgcggtgccgtgagtgttgtgaggag
acgaaccgtgacgagttcacgcggttgttcctgcgccacagccactgctactccttttcg
aagctgacgactgacctcattcgcatcaagatcctcaaatgcagcgagtttgatgacgcc
ctggcaaaggcgctgaccaatggcacgtccaactacgttacctttgcgggtgacatcatc
accgatgtcatcatcaaggagaagctcgtggcgtcgaaggatatgcgccgcacgctcatg
gccctcgatacgattgcgcggacgcgggcgccgcgcgccgcgccggcggcgccggcacag
acgcttccgtcgtacgtcacggagccgcctctgagcaagattgtgccgaatcagattacg
aagctcctcgttccgtgcgactgcgttcgccctggcgaggacgaggccttccagaaggag
gtggggcagctcatgaacgactggatcatggtgtggtcgcagaagagtcaccgctatgcc
gagaagcgcatcccatccgtcgagttcgtgaagacgctgcagcagcgccgcatgctggac
acggcccacctgcagacgtttctgagcctgggcgttcgttattgtgtggaatactacgcc
aacacaatgcttgcgatggagcgcgcagacggcaacattacaagcgagacgctggtgggg
acgcggcctggtgggccgccaggctaccgcaccccctacactgcaaagcccttcgtcatg
tgtgacgggtttgtggagctggttatggtgctgttgcaatgctgttctctgcgcaatgag
gcctcgcatgatttgcgggctgaaaccacgctactacgccgcgttctggacgccgtgacg
cgcgtgctgacggagcaccacaacttcgttgccaaggctcgccctgccccgtcgtgggca
cttgcagctgatgagcagttcatcccggtctttaaacagcagccgtacgtgcgcttgctt
agcaacctcgtctactcgcttcacaggctggaggtctcgacgacgcgcgccatgtcgact
gagttcacgagtgctttccacacgtttctacgccgcgtacaccccatggagtacccgggc
ttcgtgtttggctggctggagattttgtcgcaccgacacgtcatcccgcgcttcatgaat
gtgcagtcaatgtggccccactacgtcgacctcctcgctggtgccatgatgtttgtgaag
tttctgatcaaggggaaccgcatctccccgaacggcttggtcttctacaaatcgctgctg
aagctcgtactggtgctcctgcacgactacccgcggttcctgatcgcgcaacattacccc
ctttgcgaggccatctcgctctcgtgcgtgcagctgctcaacacggtgctgtgctccttc
ccacctgacaagcgcctgccagagccattcccccacgtggactctaacgatccggcgatg
ctgcaggtgctcgacacatccgttcaggaggcgtgcatcaaggccacttttacctccttc
agcgtgcagccgcagctcctcgcgaaccttgagatgatggtcacgaacgatgatgctccg
gtgcgcgacggcgttctgacggatgttctgaacgacctgacgcagccctcagccaagcgg
agcctcatcaacgcggtggtgcagcacatggccattgtgtacctgcgcacgcacgacaac
cgaatccctgcaaactttgcaaagtcaaatgtgctcacgtgctaccgctttttgtgcagc
cgactcaacacgaagcgccggtactacatgctcggcgcttgcgccaaccagctgcgcttc
ccgaacatccagacaaacttctttgcgaacgtgatgctgaacctgttcttgccgtcgccg
agcgtggacacgcagacgcagacctgtgtgcaggagcagatcacgcgcgtgcttgccgag
aagacggtgattgtgcagccacatccgtggggcgtactcaacacgtttgtggagctaatg
cgcgagcctaagtacaagttctgggagacctccttcatccactatgcacccctcgattcc
atgttcacgaagctgcatcacacagtgcacacgcggttaagcaagactggcggtgcccct
gctctcgatggtacacgtgccgagtcgagcactgccgttacgactgcctctggcattggt
gcaacgctgtctgcgtag
DBGET
integrated database retrieval system
