Lacticaseibacillus paracasei subsp. paracasei: LBPC_2480
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Entry
LBPC_2480 CDS
T04768
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lpap
Lacticaseibacillus paracasei subsp. paracasei
Pathway
lpap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBPC_2480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpap03021
]
LBPC_2480
03400 DNA repair and recombination proteins [BR:
lpap03400
]
LBPC_2480
Enzymes [BR:
lpap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBPC_2480
Transcription machinery [BR:
lpap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBPC_2480
DNA repair and recombination proteins [BR:
lpap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBPC_2480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAN72776
LinkDB
All DBs
Position
complement(2600718..2604302)
Genome browser
AA seq
1194 aa
AA seq
DB search
MNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFLDEGLKEMFDDIMPIDDFQGKLSLE
FVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMTKQGTF
IINGAERVIVSQLVRSPGVYFHSETDKNSRVTYGTTVIPNRGAWLEYETDAKDIAYVRID
RTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRTDEALKDIYERL
RPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQVLAETLADPDTG
EVIAQKGTKVDRQVMDKLAPYLDRDDFKTITYQPSDQGVVTDPIELQSIKVYSQVTPDKE
INLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSIDDIDHLGNRRIRSVGELLQNQF
RIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGEL
THKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYAVVNPY
GFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDETVLARHKDNN
IEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVNPHAPLVGT
GMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDAYNLMKFKRSNAGKNYNQRP
IVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVKDDVYT
SIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEVRDGDILVGKVTP
KGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSPGVNMM
VRVYITQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNI
GQVLELHLGMAARNLGIHVATPVFDGANDKDLWATVKEAGMASDGKSVLYDGRTGEPFEN
RVSVGIMYYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
AYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMKVLGAD
KKEIELRDMDDDEDDIVSVDALAKFAAQQEEKKAHEAAAQATDGKSANSTDDKK
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatggtaagcaccggacacgccggtcctatgcccggatcaaggaagttttggat
cttcctaatctgatcgagatccaaacgaattcttaccaatggttcctcgatgaaggtctc
aaagaaatgttcgacgatattatgccgatcgatgactttcaagggaaactgtcactggaa
tttgtcggctatcaactgctggaaccaaaatatactgttgaggaagcacgccaacacgat
gcaaactactctgcaccgttgcatgtgaccttgcgtttaaccaaccatgaaacaggcgag
attaagagccaagatgtgttctttggcgacttcccgctgatgaccaaacaagggacgttt
attattaatggtgccgaacgggtcatcgtttctcagttggtccgttcacctggcgtttat
ttccatagcgaaacagacaagaactcacgtgtcacttatggcacaaccgtgattcctaac
cggggcgcctggcttgaatatgaaactgacgccaaagatatcgcgtatgtccgaatcgat
cggacacggaagattccgctgaccgaattggttcgggcgttgggcttcggttccgatcaa
gacattatcaacatgtttggtgacaatgattccttgatgcttacgcttgaaaaagatgtg
cataagaacacggatgattcccgtacggacgaagcgttgaaggatatctacgaacgtcta
cgtcctggcgaaccaaaaacagccgattcatcgcggtctcttttgtatgcccgcttcttc
gacccgaagcgttatgatcttgcttcggttggtcgttacaaagtgaataagaagctgagc
cttaagacccggcttttgaatcaggttttggcagaaacactggccgatcctgatactggt
gaagtcattgcgcaaaagggcaccaaggttgatcgtcaagtgatggacaagttggcacca
tatcttgaccgcgacgatttcaagaccatcacctaccaaccttccgatcaaggcgttgtc
actgatccgatcgaattacagagtatcaaagtatactcacaagtgacccctgataaagaa
atcaatttgattggtaacggtcatattggtaaaaaagtgaagcacatcgtcccagctgat
gttttggcatcaatgaactacttcctgaatcttcaggaaggcttgggttcaattgatgac
attgatcacttgggtaaccggcggattcgttccgttggtgaactgttgcaaaaccaattc
cggatcgggctttctcggatggaacgtgttgtccgtgagcggatgtccattcaagatacc
gctacggtaacaccgcaacaattgatcaacattcggccagttgtagcttctatcaaggaa
ttcttcggcagttcccaactgtcgcagtttatggatcagacgaatccgcttggtgagtta
acgcataagcgtcgtctgtctgctcttggacctggtgggttgacgcgtgaccgtgccggt
tatgaagtccgggacgttcactacacccattatggccgtatgtgtccgattgaaacgcct
gaaggcccgaacatcgggttgattaacagtcttgcttcttatgcggttgttaatccttat
ggttttattgaaacgccatatcgccgtgtttcttgggatacgcataaagttaccgacaaa
atcgactatttgactgccgatgaagaagataactacatcgttgcgcaggcgaactcgcct
ttgaacgacgatggttcctttgttgacgaaaccgttctggctcgtcacaaggataacaac
attgaaatttctccagacaaagttgactacatggacgtttcgcctaaacaggttgttgcg
gtcgcaacggcttgcattcctttcttggaaaacgatgactccaaccgtgctttgatgggt
gcgaacatgcaacgtcaggctgtgccgttggttaatccgcatgccccacttgttgggact
gggatggaatacaaggcagcccatgactccgggacagcggttttggctaataacgctggt
accgttgaatatgttgatgctaagcaaattcgggttcgtcgtgaagatggcgccttggat
gcctacaacttgatgaaattcaagcgtagtaacgccggtaaaaactacaaccagcggcca
atcgtgaccatcggcgatcatgttgatgttgacgaaatcatcgctgatgggccagccatg
caaaatggtgaattagcattgggacaaaacccgatcatcgccttcatgacttggaacatg
tacaactacgaagatgcgattgtactctccgaacgactcgttaaagatgatgtttacacc
tcaatccatattgaagaatatgaatctgaagcacgtgacaccaagcttggacctgaagaa
gtaacgcgtgaaattccaaacgtcggtgaagaagcccttaaggatctggatgaatttggt
gtcgttcgtgtcggcgctgaagtgcgtgacggtgatattttggtcggcaaggttacacct
aagggcgttactgaattgtcagctgaagaacggttactgcatgcgatctttggtgagaaa
gcacgtgaagtacgtgacacctcgctgcgggttccccatggcggcggcgggatcattcaa
gacgttaagatctttactcgtgaagccggcgatgagctgtctcctggtgtgaatatgatg
gtccgcgtttatattacgcagaagcggaagattcaggtcggtgataagatggccggtcgt
cacgggaacaaagggacggtttccgtcgttgtgcctgaagaggacatgccatacttgcca
gacggtaccccagttgacatctgcttgtcaccaatgggtgtgccaagtcgtatgaacatc
ggacaggtgctggaattgcatctggggatggctgcacgtaacttgggcattcatgttgca
acgcctgttttcgatggcgccaacgataaagatctgtgggcaaccgttaaggaagccggt
atggcatctgatggtaagtctgtcttgtatgacggtcgaactggtgaaccattcgaaaac
cgtgtttctgtcggaatcatgtactacatgaaactgtctcacatggttgacgataagatt
catgctcgttccattggaccttacagtttagttacccaacagccacttggtggtaaagct
cagtttggtggtcagcgttttggtgaaatggaagtttgggcccttgaagcttatggcgcg
gcttatactttgcaggaaatcctgacttacaagtccgatgacgtggttggccgggttaag
acctatgaagccatcgttaagggcgaaccgattcctaagccgggtgtaccagaatccttc
cgtgtgcttgtcaaagaattgcaagcactgggtctggatatgaaggtccttggcgcggat
aaaaaagaaattgaactgcgggacatggacgacgacgaggatgacattgtttctgtcgat
gccttggcgaagtttgctgctcagcaggaagaaaagaaggctcacgaagccgcagcacaa
gcaactgacggtaagtctgccaacagtaccgacgataagaaatag
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