Lacticaseibacillus paracasei subsp. paracasei: LBPC_2583
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Entry
LBPC_2583 CDS
T04768
Name
(GenBank) excinuclease ATPase subunit
KO
K03701
excinuclease ABC subunit A
Organism
lpap
Lacticaseibacillus paracasei subsp. paracasei
Pathway
lpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBPC_2583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpap03400
]
LBPC_2583
DNA repair and recombination proteins [BR:
lpap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBPC_2583
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBPC_2583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
DnaJ_CXXCXGXG
AAA_29
nSTAND1
AAA_16
AAA_21
RsgA_GTPase
AAA_23
AAA_25
nSTAND3
zf-TFIIB
Viral_helicase1
ATPase
NRDD
Motif
Other DBs
NCBI-ProteinID:
BAN72879
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Position
2724628..2727156
Genome browser
AA seq
842 aa
AA seq
DB search
MAIPDHISVRGAYVNNLKHLNVDIPLNKLVAITGRSGSGKSSLAMGVLYAEGMRRYMSAL
STYTRRRLGQTSPAAADSVRHIPSAIALRQRPTVPGIRSTVGTATEALNVIRLMFSRLGS
PVCPNGHRVSPTLDIAKAMDLPNDGESGMGMITCPTCGVRFMAFAAEDFAFNSTGACPTC
GGTGQARTLAANRLIPDQTLTIRQGAVASWRLPGRNFMPFVAQAIGIDIDTPFQDLPKDQ
QEQVWHGERKKYAINIPSKTGKIFHMDHAQYENAFNAVEDSLATTKNERAIQRLNRFYEF
GICPTCHGSRFAPKLLSQHLVDQNIAQVSDMTLTQLAAFIPEIYHWLPADMQSLAHDIIQ
ELTQLLKPIMDLGLSYLTLSRAAASLSTGELQRIQLSRTLRTETTGVLYVLDEPSIGLHA
ANVSGLLEVMHGLVNQGNSLVVVDHNTAIIEAADQVIEIGPGAGVAGGRLIDQGSPEAIS
HDTHSLIAPFLTGAASLIVRPQAGEQEIKQTKQLQLTVTDRFNLHDLHVHFPVNCFSVVS
GFSGAGKSTLIFDALVPALSATADQPAPAFVRDLDRGGLRHVVAIDATPVGKNVRSTVAT
YTDILDHLRHLFASLPDAKAKHYTSSHFSYNVKAGACPTCGGTGVINLDIQYLPDMQQTC
PTCHGRRYNPEVLKIKWQQHSIADLLDLDVDSALTVLKDEPAISHTLQTLHDMGLGYLHL
GESTPTLSGGEAQRLKLVAHMGRSQKDTLFVFDEPSVGLHPLDVQTLIAVFQRLLKTGAT
VIAIEHDLDVIANADYVLDLGPKGGAEGGRIMAADTPQAIAKQGKGETAPYLAAHLAAFH
VK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcccgatcatatcagtgttcgcggcgcttacgttaacaacttgaagcatctc
aatgttgatattccgcttaacaaactggtggcgatcactggtcggtctggttccggtaaa
agttcattagccatgggcgtgttatacgctgaaggtatgcgccgctacatgagtgctttg
tccacctacacccgccggcgccttggccaaacaagtcctgctgctgctgactcagtacgc
cacattcctagtgccatcgctttgcggcagcggccaaccgttccaggcatccgctcaact
gtcggtacggccacagaagcgctcaacgtcattcgcctcatgttttcccgtctcggctcg
ccggtttgtcctaatggtcaccgcgtgtcgccaactctcgatattgccaaggcaatggat
ctgcccaatgacggtgaaagtggtatgggcatgatcacttgtccgacctgtggcgtccgt
ttcatggcttttgctgctgaagatttcgccttcaattcaactggcgcctgcccgacatgc
ggcggtactggtcaagcgcgcacactggccgccaaccggctcatccctgatcaaacactg
acaatccgtcaaggtgccgtggcctcgtggcgcttgcccggtcgcaattttatgcctttt
gtcgcacaagcaatcggcattgatattgatacgcctttccaggacctgccaaaagatcag
caagaacaggtttggcacggtgaacgtaaaaaatacgccatcaatatccccagcaaaacc
ggcaaaatttttcatatggaccatgcacagtacgagaatgccttcaatgcggtcgaagat
tctttagcgacgaccaaaaatgaacgcgccattcagcggctgaatcgcttctatgagttt
ggcatctgcccgacctgccatggcagccgatttgccccgaaattattgagccagcaccta
gtggatcaaaacattgctcaggttagtgatatgactttaacgcaattagccgcgttcatt
cccgaaatctatcactggttgccagcagatatgcagtcactggcgcacgatattatccaa
gaactgacgcaattgcttaagcccatcatggaccttggcctcagttacctgaccctgagt
cgagccgcggcttccttatcgactggtgaattgcaacgcattcagctcagtcgcacgctt
cggactgaaacgaccggcgtcctttacgtccttgatgaaccgtccatcggcctgcatgct
gcaaacgtttctggattgctagaagtcatgcacggtttggtcaatcaaggcaactcgctg
gtcgttgtggatcacaacaccgccatcattgaggcagccgatcaagtgattgagattggt
cccggtgcaggcgttgctggcggccgactcattgatcaaggcagccctgaagcgatcagc
catgatacccattcgttgattgcaccttttttaaccggagcggcttccttgattgttcgc
ccgcaagctggtgaacaagaaattaagcaaaccaaacaactgcaattaaccgtaactgat
cgatttaaccttcatgacctgcatgtccattttccagttaactgcttctcagtggtatcc
ggcttttctggtgctggcaagtcaactttgatttttgacgccctagtaccagcgctgtca
gcaactgctgaccaaccagctccagcatttgttcgtgatcttgaccgcggcggcctgcgc
catgtagttgcgattgatgccacgccggtcggtaaaaatgtccgctcaaccgtcgccacc
tacacagacattctcgaccatctgcgacaccttttcgccagtttgcctgatgccaaagcc
aagcactatacgagtagccatttctcttacaacgtcaaagccggcgcgtgcccgacatgc
ggcggtaccggcgtcattaacttagatatccagtatctgcctgacatgcagcaaacttgc
ccgacttgtcacggccgtcgctacaaccccgaggttctgaaaatcaaatggcagcagcac
agcatcgccgacttgctagatctggacgtggactccgccttgaccgttctgaaagacgag
cccgctatttctcacacattgcaaaccctgcatgacatgggcctcggttatttgcattta
ggtgaaagtaccccgacgctgtctggcggtgaagcgcagcgcctgaagctagttgcccac
atgggacgctcccaaaaggacacgctttttgtcttcgatgaaccatcggtaggtctacac
cccttggatgttcaaaccttgatcgctgtttttcaacggttgctcaaaaccggtgcaacg
gttattgccatcgaacacgatttagacgtcatcgctaacgctgattatgtcttggatctc
ggaccaaaaggcggtgcagaaggtggccgcatcatggctgctgacacaccgcaagcaatc
gccaaacaagggaaaggtgaaactgccccttacttggcggcccatctggcggcctttcac
gttaagtag
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