Lolium perenne (perennial ryegrass): 127309368
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Entry
127309368 CDS
T08650
Name
(RefSeq) uncharacterized protein isoform X3
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127309368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127309368
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127309368
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127309368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF7605
Motif
Other DBs
NCBI-GeneID:
127309368
NCBI-ProteinID:
XP_051196206
LinkDB
All DBs
Position
1:complement(157428499..157453293)
Genome browser
AA seq
2394 aa
AA seq
DB search
MIPFSSAVAAEVRALVQGADGSTIDSIYRELCQLADCSPDGCILLLQVCFDEVLLSVGVA
KNSQSKQYLLATIFRYCLDKPYFSTCFCEALKTVSVSDVFLETLSNELDLSRAERVGIGL
SLSDSENIGLNLKGQRFSIAQIEELCENPAQHISNDQIHDIVVFIHRTDGLSKHMDSLTN
IISLFKVKDTPFHVPLPIQAGNVWPASRHTELCAGSLDDDFDSLLSEIGKEISMADIITE
LGYGCTADIAHCKDVLAPFEPLNDLGISKLLGAVVSSTLGLDEANNTYSTFISAFGNSQT
SDSIQSTAWNINVLVDSINEIAPRTNWTTVMENLDHEGFNIPDEGAFRLLMSIYSRACKD
PFPLHAICGSLWKNLEGQLSFLKHAVAAPVHTFTFKHCSRKMVFPELANIQGNQAWYCLD
LLEVLCQLAELGFATSVRSMLDYPLSHCPEVLFLGVSHINTAYNLLQYEVLSCVFPAILK
DTKHNSLLKYLWHLNPSLTLRGFVDAHSDISCLLRIVDICQDLKILSVVLDFTSLAFSIK
LATVSFRNDNSNLEKWITEKLSAQREAFIEECIKFLKEIVVNTTYDAEGVIQQSEATIAN
ICWESCPLFIKVLQSHSGQLLTNQLVDEVSRVEAAYESRNHGAVGRKIPTPEGGSDDIEA
QANIYFHQMFSEQISTDAMIQMLARFKESTNKRELAIFNCMISNLFEEYKFFPKYPDTEL
KLAAILMGSLIKHQLVAHLGLGIALRNVLDALRKSIDSKMFMFGTAALEQFMDRLIEWPQ
YCNHILQISHLRGTHAELVSAIERALAKISSSQNEPNSSSIFPVDQHGSGSLSIGSIEAS
EASWQFINPPTQLERSPSSFPLQQRHQGFLGERSKGSTNSIQAKNILSVSQPFSSIPAVS
SITQKVTAPPSSQSSPHHSTTISTPSQSTNFLRPRSSAPSGTRSSYTTGFGAALNIETLV
AAAERRDTSVEAPPSEVQDKIFFMINNISISNLEAKAKEFNEVFQEQYYPWFAQYMVMKR
ASIEPNFHDLYLKFFDKVNSKLLNREMVKATYENCKALLQSDLIKSSSEERSLLKNLGSW
LGKLTIGRNQTLRAKEIDPKILIVEAYERGLMIAVVPFTSKILEPCHSSIAYRPPNPWTM
GILSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSFLKDRIRQIEGNPDFSNKD
VSASQTPVVAEVSSGMIPAKKLVEVQPELISTSRSTSLPNMLNQYAPPLRLPPNSMVEDD
KVALRMPDQISPSQTSSPSPALFTLSQLMAAIPRADIYFRINEKLSSLGSLQYSKIMDVA
LDKAIKEIIGPVIQRSVTIATRTTKELIIKDLAMESDDSAVSRAAHLMVGTLAGSLAHVT
SKEPLRVALSSHLRSLIQNLNNNSESTEQIVHILINDNLDLGCALIETVATRKAVEMIDG
EIKQPFSQLRRQKELLGSGYYDAFPYTQGLARVPDALRPKPAGLLCATQQRVYEDFITVW
HSQSSQNAGATTSATALTVAPGNSSIPRLYSPNLVQPSDLVPEESDHGTTQLLSVSTQLG
ASDTFAPTSLTSVFPSMSSNDAPVGEPTVATENCYQDLGTTIPLPPTAAVDRMESVFAEP
LNTEDALERYQQVALKIEALIASDGEDSEIQSVIAEVPDILYRCVSRDEAALAMAQKVFR
NLYENASKGTSVTGILATLVAICDVCKLVVKEITSWVMYCDEDKKFNVDIITGLIRSEIL
NLGDYDVNLAKIIDSGRNKGATEFAISLVQTLITQEPNGVSKLYNVVDVLSKLAIGPGSP
ESLQQLIEIARSNFNNAASFAAMKDEKVLSGRASMYKEENDTALADGVSFQDQVAVLFSD
WCHIYDHPIMGDSEYSHYIAQLQQHGLLKGDDLTDRFFHILTELAVTHTVVSEQLIAPGG
IPQQPAQQLQISYFSIDSYSKLVTLVFKYCVNIAPNKGSLLPKILFVTARTIQKDAEEKK
VSFNPRPYFRLFINLLSELSTADLHDAATFQVLTAFANAFHVLQPLRVPAWSFAWLELVS
HRSFMPKLLLCNSQKGWPLFQGLLVDLFKFMEPYLRNAEMGQPIHLLYKGTLRVLLVLLH
DFPEFLCDYHLSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLPEISKAPRI
MSDVESALKAKQMKTQVDEYLKRPEGSSFLTDLKQKLLLPLNEANVAGTRYNVPLINSLV
VYVGIQAVQQLQHNKENASAQQINQSSQVEIFQIETATEVFQNLIVNMDTEGRYLVLNAI
ANQLRYPNNHTHYFSFIILYLFAEATQDIVQEQITRVLLERLIVNRPHPWGLLITFVELI
KNPRYSFWARPFTHCAPEIERLFESVARSCGGKAVDEGVVLADDVSINEIFLDR
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttcagctcggccgtcgccgccgaggtccgcgccctcgtccagggcgccgac
ggctccaccatcgattcaatctaccgcgagctctgccagttagcagactgcagtcctgat
ggttgcattttactgcttcaagtttgtttcgatgaagtgttgctgagtgttggggtggca
aaaaattcccaatcaaaacaatatcttttagccactattttcagatattgtctggataaa
ccatacttcagcacctgtttttgtgaagcactgaagacagtctctgtcagtgatgttttc
cttgaaacattgtcaaatgaacttgatctatcaagagccgagagggttggtatcggactt
tccctgtcagattctgagaatataggattgaatctgaaaggccaaagattttcaattgct
caaatcgaggagttgtgtgaaaatcctgcacaacatatatcaaatgaccaaattcatgat
attgttgtgtttattcaccgtactgatggcctctcaaagcacatggattctcttactaac
attatttccctattcaaagtcaaagacacgccattccatgttcctctccctattcaggct
ggcaatgtttggccagcttcaagacatacagagctatgtgctggtagcttagatgatgat
tttgattcccttttatctgaaattgggaaagaaataagcatggctgacatcattactgaa
ttgggctatggatgtactgctgatattgcacattgtaaagatgtactagcaccttttgag
cccctcaatgatttgggaatatctaagttgcttggggctgttgtttcctctacccttggt
cttgatgaggctaataatacgtattcaacattcatttcggctttcggcaacagccaaaca
agtgactcaattcaatcaacggcatggaatatcaatgttcttgtggattcaattaatgaa
attgccccaagaactaactggaccactgtaatggaaaaccttgaccatgagggtttcaat
atccctgatgaaggagcttttcgtttattgatgtctatatattcccgtgcttgcaaggat
ccatttccccttcatgccatctgtggatcgctgtggaagaatttagaagggcaattatca
ttcttgaaacatgcagtggccgcccctgttcatacatttacatttaaacattgttccagg
aagatggtatttcccgaattggctaatatccaaggcaatcaggcttggtactgcctagac
cttttggaggtgttatgccagcttgctgagcttgggtttgcaacatcagtgcgatcgatg
ctggactatccattaagtcattgtccagaagtcttatttcttggtgttagccacattaat
actgcgtataatctcctccagtatgaagtactgtcttgtgttttccctgctatactcaag
gacactaaacataacagtctattgaaatatctctggcatctcaacccttctcttaccctt
cgaggatttgttgatgcccattctgatataagttgtcttttgaggattgttgatatatgt
caagacctaaagatcctatctgtggtacttgattttacttctttagcatttagcatcaaa
cttgctacagtttcctttcgaaatgataatagcaacctggagaaatggatcactgaaaaa
ttgagtgcacagagagaggcttttattgaggaatgtattaaattcttgaaagaaattgtg
gtcaatacaacttatgatgccgaaggtgtcatccagcaatctgaagctacaatcgcgaat
atttgctgggaatcttgtcctttatttataaaggttcttcagtctcactcagggcagctg
ttgactaaccaactggtggatgaagtaagtagagtggaagctgcatatgaatcaaggaat
catggtgctgtaggaaggaaaattcctactcccgagggaggttctgatgacattgaagca
caggcaaatatatattttcaccagatgttttcagaacagataagcactgatgctatgata
caaatgcttgcacgcttcaaagagtctacaaacaagagggagctagcaattttcaattgc
atgatctcaaacttgtttgaagagtacaagttcttcccaaagtatccagatacagagctt
aagttagctgctattcttatgggctcgctcattaaacatcaacttgtggctcacctggga
cttggaattgctctacgtaatgttcttgatgctttgcgtaaatctattgattcaaagatg
tttatgttcggtacggcagctctcgagcagttcatggatcgtctaatagagtggccacaa
tactgcaaccatatattgcagatctcacatcttcgtggaacacatgccgaattagtctct
gcaattgagcgagcacttgccaagatatcatcaagtcaaaatgaaccaaatagtagcagc
atatttcctgtggatcagcatggttctggttcactgtctattgggagcatagaggcttct
gaagcgtcatggcagttcattaatcctccaacacaactagaacggtcgccttcttctttt
ccactgcaacagagacaccagggttttcttggggagaggtccaagggttctacaaacagc
attcaagctaagaacattttatctgtcagtcaacctttttcttcgatacctgctgtttcg
tctatcactcaaaaggttactgcgccgccatcctcacaatcttctccccaccattctacc
actatttcaactccatcacaatctactaattttctgaggcccagaagttcagctccttca
ggcactcgatcttcgtacacaacaggatttggagctgctttaaatattgagactcttgtt
gctgcagcagaacgacgagatacatcagttgaggcccctccctctgaagttcaagacaag
atttttttcatgatcaacaacatctccatttctaatttggaagctaaggcaaaagaattt
aatgaggttttccaggaacagtactatccttggtttgcacaatacatggtcatgaaaagg
gcaagcatcgaacctaattttcatgacttgtatttgaagttcttcgacaaagtgaactca
aaattgttgaatagagaaatggtgaaagctacatatgagaactgcaaggccttgttgcaa
tcggatcttatcaaatcaagttctgaagagagatcgttgctaaaaaatctgggtagttgg
ctaggaaagctcactattggaaggaatcaaacattacgagcaaaggaaattgaccccaaa
attcttatagttgaggcatacgaaagggggctgatgattgcagtagttccgttcacttca
aagattcttgaaccttgccattcaagtatagcatatcgtcctccaaatccatggacaatg
ggtattcttagcctacttgcagagatctataatctaccaaatctcaagatgaacctgaag
tttgacattgaggtcttgtttaagaacctcagtgtggacatgaaggatgtaaaaccatct
tcttttctgaaagatcgtattcgccaaattgaaggaaatccggatttttcaaataaagat
gtcagtgcatctcaaacaccagtggttgcagaggtttcctctggtatgattccagccaaa
aagcttgtggaagtgcaaccagagttaattagtacctcccggtctactagcctcccaaat
atgttaaaccagtatgcaccacctcttcggcttcctccaaacagcatggtagaagacgat
aaggttgctttaagaatgcccgatcagatttcaccttcacagacatcgtctccatcgcct
gctctgtttactcttagtcagcttatggcagcgatcccacgcgcggatatatatttcaga
attaatgaaaagcttagctctcttggttcactacaatatagcaaaatcatggatgttgct
ttggataaggctattaaagaaattataggccctgttatccagagaagtgttacaatagct
acccgaaccactaaggaacttattattaaggatttagcaatggaatctgatgacagtgcc
gtatctcgtgctgcacatttgatggttggcacactagctggaagtctagctcatgtaact
tccaaggagcctcttcgtgttgctttgtcgtctcatcttcgaagtctcattcagaacctg
aataacaacagcgaaagcactgagcagattgttcatattctgatcaatgacaatctcgat
cttggatgtgccctaatagagactgttgcgacacgcaaggctgttgagatgattgatgga
gaaatcaagcagcccttttcacagctaaggaggcagaaagagttacttggttctggatat
tatgatgcttttccttacactcaaggtcttgcgcgtgtcccggatgcacttcggccaaag
cctgctggtcttttatgcgctacccaacaacgagtttatgaggacttcattactgtatgg
cacagccagagtagtcaaaatgctggagctaccacttctgctacagccttgactgttgct
ccgggcaattccagtatacctcgactttatagcccaaatttggtacagccatcagatctg
gttccggaagagtctgatcatggtactacgcaacttttaagtgtttccacacaacttggt
gcaagtgacacttttgcccccacaagccttacatctgtattcccctctatgtcatctaat
gatgccccagtgggtgaaccaacagttgcgactgaaaactgctaccaggatctaggtaca
accatacctcttccacctacggctgctgttgatcgcatggaatctgttttcgctgaacct
ctgaatactgaagatgcattggagagataccaacaggttgcactgaagattgaagccttg
attgccagtgacggtgaagactcagaaattcagtctgttattgcggaagttcctgatatc
ttatacagatgtgtaagtcgagatgaagctgcattagctatggcacaaaaggttttcaga
aatttgtatgaaaatgcatcaaagggtacttctgttacagggattctagcaactttagtt
gcaatatgtgatgtttgcaaacttgttgttaaagagataacaagctgggtaatgtattgt
gatgaagataagaagtttaacgtcgacataattactggattaattcgttctgagattctt
aatcttggagattacgatgttaatctagcaaagatcattgatagtggaagaaacaagggt
gcaacggagtttgctatatcacttgtccagacattgatcactcaagaacccaatggcgtc
tccaagctttataatgttgtcgatgtattatcaaagcttgcgatcgggcctggttcacca
gaatcgttgcagcagttgattgagattgcaaggagtaatttcaacaacgctgctagcttt
gctgccatgaaggatgaaaaggttttatctggccgtgcttcgatgtataaagaagaaaac
gatactgctttagcagatggtgttagttttcaagaccaggttgcagtcttattctcagat
tggtgccacatatatgatcatccaattatgggtgattcagaatatagtcattacattgcg
cagttgcaacaacatggcttgcttaagggagatgatttgactgaccgcttcttccatatt
ctcacggaacttgctgtcacacacactgttgtctctgagcaacttattgctcctggtgga
atacctcagcaacctgcccagcaactccagatttcatatttctcgattgattcatattcg
aagcttgtgactttagtgttcaagtactgcgtgaatatagcaccaaataaaggcagcctt
cttccgaagattctcttcgtaactgctaggaccattcagaaagatgctgaagaaaaaaaa
gtttctttcaaccctcggccatattttagattatttataaatttgctaagtgagcttagt
accgctgaccttcatgatgctgctacttttcaggttttgactgcgtttgcaaatgctttc
catgtgctgcaacctctgagagttcctgcatggagctttgcttggctcgaattggtaagt
catagaagcttcatgccaaagttgctgttgtgcaattcacagaagggctggccattattc
caggggctgcttgttgatttgttcaaattcatggaaccatatctaagaaatgctgaaatg
ggacaacctattcatcttttatacaagggaactttgagagtgctacttgttctactccat
gacttccctgaatttctttgcgactaccacctcagtttctgtgatgtgattcccccaagc
tgcattcaaatgcgcaatgttattctgagtgctttcccacgcaatatgagacttccagat
ccctctactcctaatttgaagattgatctgctacctgaaatttcaaaagctccaagaatc
atgtctgatgtggaaagtgctttaaaggcaaaacaaatgaaaactcaggttgacgagtac
ctcaagagaccagaaggttcatcctttttaaccgatttaaagcagaagttactgctgcct
ctaaatgaagcaaatgtggctggaactcgttataatgttcccttgattaattcgcttgtc
gtttatgtcggcatccaggctgtgcaacagttgcagcataacaaggagaatgcatcagca
cagcaaatcaaccaaagttcccaggtggagatttttcagattgaaacagctaccgaggtc
ttccagaatctgatagtgaatatggatactgaaggccgttacctcgtcctgaacgcaatt
gctaaccaactgcgctatccaaacaatcacacccattacttctccttcatcattctgtac
ttgtttgctgaggcaacacaggatattgtacaggagcagataacaagagttcttttagaa
cgtctaatagttaaccgtcctcatccgtggggattactaattacttttgttgagctcata
aagaacccacggtacagcttttgggctcggccctttacacattgcgcacccgagattgag
aggttgtttgagtctgttgcaaggtcttgtggaggaaaagctgtggacgagggagttgtt
ttagctgacgatgtatctataaatgaaatatttctagataggtag
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