Lytechinus pictus (painted urchin): 129262198
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Entry
129262198 CDS
T09066
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129262198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129262198
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129262198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_14
TPR_1
TPR_16
TPR_2
TPR_12
TPR_CcmH_CycH
TPR_8
TPR_11
TPR_17
TPR_9
ANAPC3
TPR_6
ARM_TT21_5th
ARM_TT21_C
T7SS_EccA1_N
DUF7017
ARM_TT21
TPR_COPA_B
TPR_20
COG4_N
Imm49
Alkyl_sulf_dimr
B12-binding_2
Motif
Other DBs
NCBI-GeneID:
129262198
NCBI-ProteinID:
XP_054756251
LinkDB
All DBs
Position
5:60073443..60124649
Genome browser
AA seq
1550 aa
AA seq
DB search
MAAGGGSKELKAAIKKAKEAIKVKDYHQALEHSKHALSVDPKHYNALIFLGKSTTELGQG
DEAEKAYRKATDIDPKQILAWQGLAALYEKIDTPQNSESLVDVYQELLKLSDDKTKETQI
AEKLADLYQKRSKPLQACEVLHSLILKSEDNEYKIEKWSKIIQLLSKQASLDESNTNLLK
EAYTVVMESGNIENESLRELYKGYIDLQFKDREVDVGVLKATCSKMYEKFPSEIYPLEKM
TEMILIETFALKTSDDWSVYGQLLDLDKDNVWAVIGQGQLKLTSRDYKAAKEYLTKASQK
LPGFPLSWLFLAQCQLSLHDYQAAKHSAEQGRRALKTFNHPALSEAVRLHEAFRIVQGKA
CIDSGLMTQGLRAVEIFKKLLPDAIDKDSIYKLLTLAHLLVGDFASAQQSFEMISSDQDE
SDTIALGGWLKFHQGEFSDAQEKLQVALAQEEKAVYHYWLGRVYWAMGGQAQLDKSKCNS
SLLKAAKLDPNYSDSFLYIGHYYMQIGKDTVRAKRCYKKAYDLNSANEAAAKSLGDVCDV
LDEKDEAISVYTKVTSRAALGEAKWAWLRLGLVQLKAGNATEAVESFQAVLRADPDDIHC
QECLAEAYLSRGSHTAALKTFSRIVEVEPNSTYALFKIGHIKQTVGLYSEAVSDYQAVLS
TTPDYVPALSGQGETYILMAKAALHEFFNARGVSYIQDAITVLTRAVLLRSDICGLWKLL
GDACTVLAPLHDNLIRISVNGAFTCGDEKKIETLDKGELLALGGRCYGRAVERQKGCASL
WHDLGINFYHQYQYTQDVIMANKALQFIRKAIKLDESNHIHWTALGVVAASKDVDDPKLA
QHAFIKSIQLESKNVVAWTNLGTLYLSHGNLKLANEAFAVAQSLEPNYVQCWIGQSILAE
TVGSQEAMDLYRHTTELTTHIESGLGYADLVCSALLDPSLNKDSEVYRYNVIQMAAIPAA
EAAIGKVADRLQISGEAHTLHGILQERQGLHRAAEVSYKQALEVVKTQGDAKQINIALSN
HGRALNSIGKAEEARDTLRSISPLVDIQDILQLALALYRNKEWQEAYMAYEQALQLVSSD
VERSQILTALAMVSCQSGDLATAKTLLFQSSQLSSPCHEGLVALSALGLQTQDMVLTNAA
LAELAKQPNQQDLVHQTTVLASAAHYLQGDLPAMSKHLMTAVKDYPNDNHLWNLAAELML
LLDATNVEFTLTCSEKARLLVPTHKNVLQVNAAAKLCSGCHGSSSRGRLSPSLIAAQKAV
HAMPGDMNNWALLGAACSAQATYQHVHQDEWNLIDVNLQVAKFLLQTSQADSKLAAWVSL
HNVFCLLQSQQWKEAKDLSQRFLEWCNYGNETSDDLMLLHNLSDWMATGKKSNLKSLREA
ITASQSPLAWQTLGKIYTESMMMTAAEACYKHCLSVTSGRKQITILHQLAYLAILGLKTG
NDNGSWGELGHQMIDELNRQAPKEAMSHLLKGLLYKHRGNQDRQSRREFQHGMESEGEPG
GEDYTRSVIRVQLVEALMKKDKEAAQALVNEALEKQDPFSTRLQTMVSAL
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaggaggtggaagcaaggaacttaaagctgctatcaagaaagctaaagaagcc
atcaaagtaaaggattatcatcaggctttagaacattcgaaacatgctttgagtgtggat
cctaagcattacaatgccttgatatttcttggtaagtctaccactgagcttggacaggga
gatgaagcagagaaagcatataggaaagcaacagacatagatcccaagcagattctagca
tggcagggactggctgccctctatgagaagatcgataccccccagaactcggaaagcctt
gtggatgtgtatcaggagcttttgaaattatcagatgataagacaaaagaaactcagatt
gctgaaaagctagcagacctctatcaaaaacgtagcaaacctttgcaggcatgtgaagtc
ctccattccttgattttgaaatctgaagacaatgaatataagattgagaagtggagcaag
ataatacaactcctatcaaaacaggcatcacttgacgagagcaataccaacctgctaaag
gaagcatatactgtggtcatggagtctggcaacattgaaaatgaatcactgagagaactc
tacaagggatacattgacttacaatttaaggacagggaagttgatgtaggtgtgctaaag
gcaacatgttctaagatgtatgaaaagtttccatcagagatttatcccctggagaaaatg
acagaaatgattctgattgaaacatttgcattgaagacatctgatgactggtcagtctat
ggtcagttacttgatctggataaggacaatgtatgggcagtgattggtcaaggtcaactt
aaactgactagtcgagattacaaggcagctaaggagtatctcacaaaagcatcacaaaag
ctacctggctttccactcagttggttattcttggctcagtgccaactcagtctccatgat
taccaagcagccaaacattcagctgaacagggtagaagagctctgaagaccttcaaccat
ccagcactcagtgaggcagtaagattgcatgaagcatttagaattgtccagggaaaagct
tgcatcgattcaggccttatgacacagggcctgagggctgtagaaatatttaaaaagctg
ttacctgatgctatcgataaggactccatatacaagctgttaaccttggcacaccttctt
gtaggggactttgcaagtgcacagcagagctttgagatgatatcttctgatcaagacgaa
agtgatactatagctttaggtggctggttaaagtttcatcaaggggaattttctgatgcc
caggagaaattacaagtggctctagcccaggaagagaaggcagtctaccattactggctt
ggtagagtgtactgggctatgggaggtcaagcacaactagataaatctaaatgcaattca
tccctactcaaggctgccaaacttgaccccaactactcagattccttcctttacattgga
cattactacatgcagataggcaaagatacagtgagagcgaaacgttgttacaaaaaagcc
tatgatttgaattccgctaatgaagctgcagctaaatccctgggtgacgtgtgtgacgta
cttgatgaaaaggatgaagctatttctgtctacacaaaagtgaccagtcgggctgctctg
ggtgaggcaaaatgggcgtggctaagattaggtctcgttcagcttaaagcaggcaatgca
acagaagctgtagaaagctttcaagcagttctcagagctgatcctgatgatatacactgt
caggaatgccttgcagaagcttatttgagcagaggcagccacacggcagcattgaaaaca
ttctctcgcattgtagaggtggaaccaaattcaacatatgctttattcaagattggtcac
atcaagcagactgttggtctttactctgaggcagtgtcagactatcaggcggtcctcagc
acaacacctgactatgttccagcgctgagtggccaaggtgagacatacatcttaatggcc
aaggctgctcttcatgagttcttcaatgccagaggtgtttcttacatccaggatgcgatc
actgtcttgacaagagctgtactacttcgttctgatatctgtggcttgtggaaactgttg
ggagatgcctgcaccgtgttagctccactacacgacaatctcatcaggatttcagtgaac
ggggcttttacctgtggagatgagaagaaaattgaaacattagacaaaggagaactgctg
gctctaggtgggaggtgttatggtcgggctgtggagcgtcagaaggggtgtgctagcttg
tggcatgatttaggcatcaacttctatcatcagtaccagtacactcaggatgtgataatg
gcaaataaagcattgcagtttatccgcaaagccatcaagctagatgaatctaatcacata
cactggactgcgttgggtgttgttgcagcatcaaaagatgttgatgacccaaaacttgca
caacatgccttcatcaaatcaattcaattagaatcaaagaatgttgtagcatggaccaac
ctaggaaccctatacctttcccatgggaacctaaagcttgctaacgaagccttcgctgtt
gcccagtctttggaaccaaactatgtgcaatgctggattggacagagtatactagctgag
acggtagggagccaagaagccatggacctctacagacataccacagagttaactacacat
attgaaagcggccttggctatgctgatttggtgtgtagtgcactcctagacccgtcactc
aacaaggattctgaggtgtacagatacaatgtgattcagatggctgccattcctgctgct
gaagcagcaataggcaaagttgcagatcgtctccaaattagtggagaagctcacacttta
catggaatattacaagaaagacaaggtctacatcgagctgcagaagtgtcctataaacaa
gcactagaggtggtaaagactcagggagatgcgaagcagatcaacatcgccttgtctaat
catggtagagctttgaactcaatcggtaaagcagaggaagccagagataccttacgttct
atcagtcctctggttgatatccaggatatccttcagcttgctctggccctctatcggaac
aaggaatggcaggaagcctatatggcttatgagcaagcattgcagttggtttcatctgat
gttgagagatctcagatcctgacagctcttgccatggtatcatgccaatctggagatctt
gccactgctaaaacattgctcttccaaagttcccagctgtcatccccatgccatgaaggg
ctagtagcactgagtgccttgggactacagacccaggatatggtcctcaccaatgcagcc
ctggctgagcttgccaagcagcctaaccaacaggacctggtccaccaaacaacagtcctg
gcctccgctgctcattacttgcagggtgatttaccggcaatgtctaagcacctcatgaca
gcagttaaagactatcccaatgacaatcatttatggaatctggcagcagaactgatgcta
ctgcttgatgctacaaatgtggagtttacattgacctgttcagaaaaggcaaggcttcta
gtaccaacccacaagaatgttcttcaagtcaatgctgctgcaaaactttgctctggttgc
catggtagttcttccagaggtcgtctttctcccagcttgattgcagcacagaaggctgtc
catgccatgccaggtgatatgaataattgggcccttcttggagctgcttgttctgctcag
gcaacataccaacatgtccaccaagatgagtggaatctgatagacgttaatcttcaagtg
gccaaattcctcttgcaaacaagtcaagcagattctaagctagcagcgtgggtctctctt
cacaatgtattctgcttgttacagagtcaacaatggaaggaagcaaaggatctctcacag
aggttccttgaatggtgtaactatggtaacgagaccagtgatgaccttatgttactacat
aacctgagtgactggatggcgacaggaaagaagtctaatctcaagtcactcagagaagca
atcacggcttctcagtcaccactggcatggcagacattaggtaagatctacactgaatcc
atgatgatgactgcagcagaagcctgctataagcattgtctatccgtcaccagtggtaga
aagcagatcactatattacatcagttagcataccttgctatcttaggtttgaagacagga
aatgataatggttcatggggtgagcttggtcatcaaatgattgatgaactcaacagacag
gctcctaaggaagctatgagtcacttactgaagggattactttataaacatcgaggtaat
caagacaggcaatcaagaagggaatttcagcatggcatggagagcgaaggggagcctggg
ggagaagactacacccgctctgtaataagagttcaattagtagaggctttgatgaagaag
gataaggaagctgcacaggcacttgtaaatgaagccttggagaaacaggatcccttcagt
acaagactacagacaatggtttcagcactataa
DBGET
integrated database retrieval system
