Limnochorda pilosa: LIP_3278
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Entry
LIP_3278 CDS
T04150
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpil
Limnochorda pilosa
Pathway
lpil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LIP_3278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpil03021
]
LIP_3278
03400 DNA repair and recombination proteins [BR:
lpil03400
]
LIP_3278
Enzymes [BR:
lpil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LIP_3278
Transcription machinery [BR:
lpil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LIP_3278
DNA repair and recombination proteins [BR:
lpil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LIP_3278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BAS29095
UniProt:
A0A0K2SPQ0
LinkDB
All DBs
Position
complement(3443413..3447177)
Genome browser
AA seq
1254 aa
AA seq
DB search
MLDVNNFDRIQIGLASPEQMRAWSSGEVKKPETINYRTLKPEREGLFCEKIFGPTKDWEC
HCGKYKKVRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWFFKGIPSRMGLILDL
SPRTLEKVLYFAAYIVVHPGDTPLTKKQLLSENEYREYREKYGNAFEAGMGAEAIKKLLD
EIDLEQMTEELRREIATTSGQRRVRAIRRLEVVEAFRQSGNRPEWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKRLVDMGLAHNIKSAKRAVERVRPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKIHPLVCSAYNADFDGDQMAVHVPLSAEAQAEARLLMLSSHNLL
LPASGRPVTTPTQDMVIGCYYLTLDRKSSPENPLKGEGKVFAHPNEVHLAYDQGEVDLHA
HVTVRMPQADGTWVRRETTPGRLFFNEVLPPEMGFYNQVIDRKELGRLVDRLYRRFGNTR
TAETLDRIKALGFHFATRSGTTVGIKDISVPPQKQELLQKAEEQVEKIEQQHRRGLLTSE
ERYQQVVRVWTETKEAVTKAMLDNLDRLNPVYMMATSGARGNESQLSQLAGMRGLVADPR
GRTIEIPIKANFREGLTVLEYFISTHGTRKGLADTALRTADSGYLTRRLVDVSQDVIVRE
EDCGTTQGIEVWRPQEGEEAEPLPERITGRVTAEAVFHPETGERIADENQLIDEELAAHI
EEAGVEKVVIRSVLTCRSRHGVCVRCYGRNLATGEMVEVGEAVGTIAAQSIGEPGTQLTM
RTFHTGGVAGEDITSGLPRVEELFEARKPRGEAKITEISGTAHIDESRGVRKVIVTSSEG
SQKSYTVPFGARLKVREGQPVEAGDPLTEGSINPHDILAIKGVRAVQQYLVREVQNVYRS
QGVDINDKHIEIIVHQMMRKVKVDDPGDSHLLPGGLYDSFEFEEENRRVEAEGGRPAEAK
PTLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKVDPLVGLKENVLIGKLIPAGTGL
PVYRKLAVRPADDAEPVARGEKDERLGDGAGIAVQVRSGEDDTGLMATVEDEADLSGDDQ
AGAGEAALVEEEGDGTDAEEAEREDGPQEPARIGAASPDFMQDETLHERTGSTD
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacaacttcgaccgtatccagatcggcctggcatccccggagcagatg
cgggcttggtcgtcgggcgaggtgaagaagccggagaccatcaactaccgaaccctgaag
cctgagcgggagggcctcttctgcgagaagatcttcgggcccaccaaggactgggagtgc
cactgcggcaagtacaagaaggtgcgctacaagggcatcgtctgcgaccgctgcggggtg
gaggtaacccgggccaaggtgcggcgcgagcggatgggccacatcgagctggcggccccg
gtctcgcacatctggttcttcaaggggatcccatcccggatggggttgatcctggacctc
tccccccgcaccctggagaaggtgctctacttcgcggcctacatcgtcgtccaccccggc
gacacgccgctcaccaagaagcagctcctctccgagaacgagtaccgggagtaccgggag
aagtacggaaacgccttcgaggcgggcatgggcgccgaggccatcaagaagctcctggac
gagatcgacctcgagcagatgaccgaggagctgcgccgggagatcgccacgaccagcggc
cagcggcgggtgcgggccatccgccggctggaggtggtggaggcgttccgccagtcgggc
aaccggcccgagtggatgatcctggacgtggtgccggtgatcccgcccgagctgcggccc
atggtgcagctcgacggcggccgcttcgcgacctcggacctgaacgacctctaccggcgg
gtgatcaaccggaacaaccggctcaagagactcctggagctgggggcgccggacatcatc
gtgcggaacgagaagcggatgctccaggaggccgtcgacgccctcatcgacaacggtcgc
cggggccggcccgtgacgggaccgggcaaccggccgctcaagtccctctccgacatgctc
aaggggaagcaggggcgcttccgccagaacctgctgggcaagcgggtggactactcgggc
cggtcggtgatcgtggtgggaccggagctgaagctccaccagtgcggcctgcccaaggag
atggccctggagctcttcaagcccttcgtcatgaagcggctggtggacatgggcctcgcc
cacaacatcaagagcgccaagcgtgccgtggaacgggtgcgccccgaggtgtgggacgtg
ctggaagaggtgatccgggagcacccggtgctcctgaaccgggcgcccacgctccatcgc
ctggggatccaggccttcgagcccgtgttggtagagggccgggcgatcaagatccacccg
ctggtctgctcagcctacaacgccgacttcgacggagaccagatggcagtgcacgtgccg
ctctcggccgaggcccaggccgaggcgcgcctcctgatgctctcgtcgcacaacctgctc
ctgccggccagcggccgccccgtgaccacgcccacccaggacatggtgatcggttgctac
tacctcaccctggatcggaagagcagccccgagaaccccctgaagggggaggggaaggtc
ttcgcccatcccaacgaggtgcacctggcctacgatcagggcgaggtggacctgcacgcc
cacgtcacggtgcggatgccgcaggccgacggcacctgggtgcggcgcgagacgacgccg
ggccgtctcttcttcaacgaggtcctgccgccggagatgggcttctacaaccaggtgatt
gaccggaaggagctcggccgcctggtggaccggctctacaggcgcttcgggaacacccgg
actgccgagaccctggaccggatcaaggccttgggcttccacttcgccacccgctcgggc
acgacggtgggcatcaaggacatctcggtgccgccccagaagcaggagctcctccagaag
gcggaggaacaggtggagaagatcgagcagcagcaccgccggggcctcctcaccagcgag
gagcgctaccagcaggttgtgcgggtctggaccgagaccaaggaagcggtcaccaaggcc
atgctcgacaacctggaccgcctcaaccccgtctacatgatggccacctctggagcccga
gggaacgagtcccagctctcccagctcgcgggcatgcggggcctggtggccgatccccgg
ggccgcaccatcgagatccccatcaaggccaacttccgcgaggggctcacggtgctggag
tacttcatctccacccacggcacccggaagggcctggccgacacggcgctccgcaccgcc
gactcgggctacctcacccggaggctggtggacgtctcccaggacgtcatcgtccgggag
gaggactgcggcaccacccagggcatcgaggtctggcggccccaggagggtgaggaggcc
gagcccctgcccgagcgcatcactgggcgggtgacggcggaggccgtcttccacccggag
acgggcgagcggatcgccgacgagaaccagctcatcgacgaggagctggccgcccacatc
gaggaggcgggtgtggagaaggtggtgatccggtcggtcctcacctgccggtcgcgccac
ggggtctgcgtccgctgctacgggcggaacctggccaccggcgagatggtggaggtgggc
gaggccgtggggaccatcgcggcccagtccatcggcgagccgggcacccagctcaccatg
cgcaccttccacaccggcggcgtggccggcgaggacatcacctcgggcctcccgagggtg
gaggagctcttcgaggcccgcaagccccgaggcgaggcgaagatcaccgagatctccggg
accgcccacatcgacgagtcccggggtgtgcggaaggtgatcgtcacctcgagcgagggg
agccagaagagctacacggtgcccttcggggcacgcctcaaggtacgggagggccagccc
gtggaggcgggggatcccctcaccgagggctcgatcaaccctcacgacatcctggccatc
aagggcgtgcgggcggtccaacagtacctggtgcgggaggtccagaacgtctaccgctcc
cagggtgtggacatcaacgacaagcacatcgagatcatcgtgcatcaaatgatgcggaag
gtgaaggtggacgatccgggcgacagccacctcctccccggcgggctctacgacagcttc
gagttcgaggaagagaaccggcgggtggaggccgagggcggccgcccggcggaagcgaag
ccgacgctcctgggcatcaccaaggcatccctggccaccgacagcttcctctcggccgcg
tccttccaggagacgacccgggtgctcaccgaggcggccatcaagggcaaggtggacccg
ctggtgggcctcaaggagaacgtgctcatcggaaagctgatcccggcgggaacggggctg
cccgtctaccggaagcttgcggtgcggcccgcggacgacgcggagccggtggcgcgcggc
gagaaggacgagcggctcggggacggagcgggcatcgccgttcaggtccggtcgggcgag
gacgacaccggcctgatggcgaccgtcgaagacgaagccgacctgtccggggacgaccag
gccggtgctggagaggcagccctcgtcgaggaagagggcgatgggacggacgcggaggag
gcggagcgggaggacggcccgcaggaacccgcccggatcggtgcagcctctccggacttc
atgcaagacgagacgctgcacgagcgtaccggttccaccgactga
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integrated database retrieval system
