Lactococcus piscium: LACPI_2095
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Entry
LACPI_2095 CDS
T03909
Name
(GenBank) Putative DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lpk
Lactococcus piscium
Pathway
lpk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LACPI_2095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpk03400
]
LACPI_2095
Enzymes [BR:
lpk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LACPI_2095
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LACPI_2095
DNA repair and recombination proteins [BR:
lpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LACPI_2095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
NFACT_N
HscB_4_cys
zf-RRN7
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
CEN29295
UniProt:
A0A0D6E0H6
LinkDB
All DBs
Position
I:complement(2188412..2189245)
Genome browser
AA seq
277 aa
AA seq
DB search
MPELPEVETVRRGLNKLVSGQKIISIQLNYQRMIKSDLSDFLAYLPGKTILTVSRRGKYL
LFELGDKTLVSHLRMEGKYQLFPSEAVPDHKHFHAFFALSNGQTLVYQDVRKFGTMELVD
QDKLLAFFRGKKIGPEPIASEFTLAPFQEKLVKSTKKIKPYLLDQTLVAGLGNIYVDEVL
WLSKIHPSEIARNLSKKQIADLRQAIISVLDEGVKRGGSTIRSYKNALGLAGTMQDSLKV
YAKKDQPCHICGRPIEKYKLAGRGTHFCPHCQHLKKG
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagtagaaaccgtgcgtcgagggcttaacaaacttgttagcggt
cagaaaataatctctatacaacttaactatcaacgtatgatcaagtctgatttatccgat
tttttagcttatttaccaggcaagacgattttgactgttagtcgtcgtggcaagtattta
ttgtttgagttaggggataagacattggtcagtcatctgaggatggaaggcaagtaccaa
cttttcccaagtgaagcagtaccagatcataaacattttcatgcttttttcgcgctatca
aatggtcagaccttagtttatcaagatgttagaaaatttggtacgatggagctggttgat
caggacaagctgcttgcttttttcaggggcaaaaaaattgggccagaacccatagcatca
gagtttaccttagcaccttttcaagaaaaacttgtcaagagtacaaaaaaaattaaaccg
tatttactagatcaaaccttagtagcaggactaggcaatatctatgtcgatgaggtacta
tggttatctaaaatccatccatcagaaattgcgcgaaatttatcgaagaaacaaattgca
gatttgagacaggccatcatttcagtactagatgaaggtgtcaagcgaggcgggtctact
attcggagctataaaaatgctttggggctagctggtaccatgcaagacagtctgaaagtg
tacgcaaagaaagatcagccttgtcacatatgtggtagaccaatcgaaaaatataaactt
gcggggcgtggcacgcacttttgtccacactgtcaacacctaaaaaaagggtga
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