Limulus polyphemus (Atlantic horseshoe crab): 106459523
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Entry
106459523 CDS
T08968
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106459523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106459523
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106459523
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106459523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
DUF4327
Motif
Other DBs
NCBI-GeneID:
106459523
NCBI-ProteinID:
XP_022241734
UniProt:
A0ABM1SDM9
LinkDB
All DBs
Position
Unknown
AA seq
2219 aa
AA seq
DB search
MNLDSLSFALSQISYSVTNLTKKNFKSGVQEISRLVAQHGLEAERHLLRCLFSHIDFSGD
GKSSGKDFHQIQYLTQECASLISKPSFVSNLCSAIDKPLHHQKSLRSSSQLLSNLSKVLK
LTRVQEVAFGLALLHSSNSDLCNHATQFLKQKVPELLRSYTDSDSTADQEGSLQDSAPEF
LHLLLIYILHSPKDQVGLTTEQKESFLQSLRRDFPQPRVPVILAPLLYPQKQEILMEKAV
SETSAMAKQVDDSVADLVREMGYCFTASVEDCKTNLLHLCQNQIMPSVVARILSVMARTH
TGLGDSISLQSLGSGGSMWNDSKDKNDGNHFTTWSVDVFVQALHELVPSLNWKEVVQELD
HPGFLLKDRQGLKLLWHSLIRGLNREVFPSEYIYRHWRNSEGQLSLFQQILKNSDLLCLL
DYNCHTVVTDILKAPPEDDNRDISNWKSLDLIETLLHLSDVSQCGPVQELFKFPVQHCPD
ILVLGLLQISGSLNLLRQELLSNLIPVFLGNHSNSAIVLHYAWHAQVHAVKVRPIIMHAM
AEWYLRGDCDQARLSRILDVAQDLKALSVLLNGNPFSFVIDLACLASRREYLKLDKWLSD
KIQEHGFGSSFLLGLNTSTVMSSAISSASIKTGFAAPTVDRLRQGDMSAMFPEMSQQVSK
EVEDEANGYFQRIYNHPPHPTLSIDEVLEMLKKFQESPNKREREVFSCMLRNLFEEYRFF
PQYPDKELLITAQLFGGIIEQGLVTFMSLGLALRYVLDALRKPHGSKMYFFGITALDRFK
TRLKEYPQYCQHLSSIAHFPDFPSHLIEYIEYGARTQEPPNHPQGLSLPQSMVGMSSGFG
PIVSATARTVTTTTATVITTATTTKPSTIGSGKPSIANATNIDTLLVATEKDEKMVIPPE
SVQDKVGFIINNLSQINLAQKTEEFKELVKEDYWPWASQYLVMKRASIEHNFHTLYSNFL
DTLRQVDLSKLVVRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLAKNKPIMQI
DIDIKSLLIEAYHKGQQELLYVVPFVAKVLESCGKSRVFKPPNPWTMGIMSVLAELHQEP
ELKLTLKFEIEVLCKNLNLDINDLKKEKISNVFKDHHRLARIEPQLSPLPKRKEQMLNIS
IPQPKIQSSSLVPASTAAPPKMVQEEVSAGVQAGVVTVRGSTTPTGGSSATPMASGFPQP
QFAYLDINVLSITGLSQHIQINNQLPLLQSHPHLKQVVKSAIEHAVQEWLGPVGERSIRI
AIGTCEQIVKKDFALDPEEARMRTAAHHMVRSLTAGMVMITCREPLNMSITTNLKASFLS
ALRGATQQQKELVEQAATVVAQENIELACCFIQKTAVEKAVLEIDKKLASEYDRRKHARA
EERRYCDPVVLTYQAERMPEQIRLKVGGVTLPQMAVYEEFARNIPGFLPSHERDSVSNYI
SKPLQVSQSFSTDDITQIYDKVIAELDRYIQSLMAIPASPQAAALHSLREGVFLVRTSRE
IVTALTLVQKTVESLLEGMTQHSPDPEVAIRYRDGHLLVLKALADPRAFGTQWTVKHVTR
ALIECRDDYRYNLEGVDCLIRSHLVNMPSYDLHLTQLMEGGLNYLAVAFAMQLVKLYIVD
KRHDGFFSEGDLYHTVEILARIATHSRQPPEGLSQLIDMVQCASQESGFLDRAPGGPMSM
MHSGISQAREYDDPPGLHEKTEYLLREWVNMYHNASAGRDSTKAFTMFVHQMNVQGILKT
DDLITRFFRLSTEMCTELCYRAFSDQSNPSPSLVRAKCFHTLDAYVRLITLLVKHSGDAN
NSLTKINLLHKVLGIVAGVLLRDHDFRSTEFQQLPYHRIFIMLFLELSAPEQVLESISVQ
VLNAFCNTLHILQPSKAPGFAYAWLELVSHRVFLGKMLVLTPQQRAWGMYAQLLIDMFKF
LAPFLRNVELPKQIQLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILS
AFPRHMRLPDPFTPNLKVDLLPEITQAPRVLTNFASMIQPANFKKDLDSYINSRSPVTFL
SELRSNLQVSNEPGMRYNIPLINALVLYVGTQAISHIQTKGQAPSMGTITHSSHMDIFQN
LAVDLDTEGRYLFLNAITNQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLI
VNRPHPWGLLVTFIELIKNPTFKFWNHEFVRCAPEIEKLFDSVARSCMPQKPSSDTAST
NT seq
6660 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactctttgtcttttgctttgtctcaaatcagttattcagtaacaaattta
accaagaaaaatttcaagtctggtgttcaggagatatcaagactcgtagcccagcacggc
ttagaagcagagaggcacctcctacggtgtttgttttcccacattgactttagtggtgat
ggtaaaagtagtggaaaagactttcatcagattcagtacctaactcaggagtgtgcctca
ttgataagcaagcctagttttgtatcgaatttgtgtagtgcaatagacaaacctttgcat
catcagaagagcttgagatcttcttctcagcttctgtctaatttgagtaaagtgcttaaa
ctcactcgagtacaagaagtagcatttggacttgcacttcttcattcttcaaatagtgac
ctgtgtaatcacgcaactcagttcttgaaacaaaaggttcctgaacttttgcgatcttac
actgactcagactccacagctgatcaagaaggaagcttacaggattctgcacctgaattt
cttcatctgttgttaatttacattcttcactctcccaaagatcaggttgggttaactact
gaacagaaagaatccttcctgcaatccttaagaagagactttccacaaccaagagttcca
gttatattggcacccttgttataccctcaaaaacaggaaattcttatggaaaaagcagtt
tctgaaacatcagcaatggctaaacaggttgatgattctgtggcagatctcgttagggaa
atgggatactgttttactgcaagtgtggaagattgcaagacaaacttattacatttatgt
cagaaccagattatgccatctgtcgtagccagaattttatctgtgatggcaagaacacat
acagggcttggtgatagtatttcattacagagtcttggttcaggagggtctatgtggaat
gattcaaaggacaagaatgatggaaaccacttcactacatggagcgttgatgtttttgtc
caagctcttcatgaactagtgccatctctgaattggaaagaagtggtgcaagaactagac
catcctggttttttgttaaaagacagacagggacttaaacttttgtggcactcattgatt
agaggattaaaccgtgaggtttttccatctgagtacatatataggcactggaggaattct
gaaggacaactatcattatttcaacaaattttaaagaactcggatttattgtgcctgttg
gattataactgtcacactgttgtaactgatattttaaaagcaccaccagaggatgataac
agggatatttctaattggaagtcactagacttgatagaaacactgcttcacctctcggat
gtaagccagtgtggaccagtgcaagaactgttcaagttccctgtccagcattgtcctgat
atattggtactggggcttctgcagatttcgggttctttaaacctattacgacaagaactg
ttgtccaacctgattcctgtatttttaggaaatcattccaattcagcaatagttctacat
tatgcttggcatgctcaggtccatgctgtcaaagtgagacctatcatcatgcatgctatg
gctgaatggtacttaagaggagattgtgatcaagctcgcctgtctcgtatattggatgtg
gcacaggacctgaaagctctgtcagtgttgttaaatggtaacccattctcttttgtgata
gacctagcatgtctagcatctcgacgggaatacctgaaattggacaagtggctgtcagac
aaaattcaagaacatgggtttggttcaagttttcttctaggcttgaacacaagcacagtc
atgtcatcagccatcagctcagcctcaataaaaactggatttgcggcacctactgttgat
cgtttgagacaaggtgatatgtcagccatgttcccagaaatgagccaacaagtgtctaag
gaagtggaagatgaagctaatggatactttcaaagaatttacaatcatcctcctcaccca
actctctctattgatgaagtgttagagatgttgaagaaatttcaagagtcacccaataaa
agggaaagggaagttttcagttgtatgctacgaaacttgtttgaggagtaccggtttttc
cctcaatacccagacaaagaattgttgataactgcacaactgtttgggggaatcattgaa
caaggtcttgtcactttcatgtccctgggcttggcactacgctatgtacttgatgcactc
aggaaacctcatggaagcaaaatgtatttttttggtataacagcccttgacaggtttaaa
acaagattgaaagaataccctcagtattgccagcatctttcctctattgctcacttccca
gatttcccaagtcatttgatagagtacattgaatatggagctcgcacccaggaaccaccc
aaccatccccaggggttatctttacctcaaagtatggttggaatgtcttcaggtttcggt
cctatcgtttctgcaacggcacggactgttaccactaccactgcaactgtgattactact
gctactactacaaaaccatcaactattggaagtggaaagccatccattgctaatgctact
aatattgacacgctgcttgtagcaactgagaaagatgaaaagatggtaatacctcctgaa
tcagtgcaggacaaggtgggatttattatcaacaatctatcacagataaacctggcacaa
aagacagaagagtttaaagagcttgtgaaggaagattactggccatgggcttcccagtac
ttggttatgaaaagagcatccattgaacacaattttcacacactgtactccaatttccta
gacacactgcgccaagtagatcttagtaaacttgtagtgcgtgagaccttccgcaacatt
aaggttcttcttcgaagtgacaagggaattgctaacttttcagatcgttctttattaaag
aatttaggccattggttaggaatgctgacgttggcaaaaaacaaacctataatgcagata
gatatagacataaagtctctacttattgaggcttatcataaaggacaacaagaacttctc
tatgtagttccttttgttgccaaggttctggaatcttgtgggaaaagtcgagtcttcaag
cctcccaacccttggacaatggggatcatgagtgttttagccgagttacaccaagaacca
gaactaaagttgactctgaagtttgaaattgaagttctttgtaagaatctcaatttggat
ataaatgatttgaagaaggaaaaaatcagcaatgtgtttaaagaccaccatagacttgct
cgcattgaaccacagctatcacctcttccaaaacgaaaggaacagatgttaaacatatca
attccacaacccaagatccagtcttcatcattggttcctgcaagtacggctgctccacct
aagatggtacaggaggaggtctctgctggagttcaagcaggagttgtaactgttcgagga
agcaccacccctacaggaggaagctcggcaactcccatggcctctggattcccacagcca
cagtttgcataccttgatattaatgtattatccataactggtctttcccagcatatccag
attaataaccagcttccgttattacaaagtcatccccatctaaaacaagttgtaaaatct
gctattgaacatgccgtccaagaatggctgggaccagtgggagaacgttccatcagaatt
gctattggaacctgtgaacagattgttaagaaggactttgcacttgatccagaagaagct
cgaatgcgcacagcagcccatcacatggtccgtagcttgacagctggtatggtaatgata
acttgtcgagaaccacttaatatgtccattactaccaatcttaaggcctcatttctttca
gcacttagaggagcaacacagcagcagaaggagcttgtagaacaggctgccactgttgta
gctcaggagaacattgaactggcctgctgttttatacagaaaactgctgtggagaaagcc
gttctagagatagacaaaaaattggcttctgagtatgatcgacgcaagcatgctagagca
gaagagcgtcgttattgtgatccagtggtcctgacataccaagctgaaagaatgcctgaa
caaatcaggttaaaggtggggggagtcacccttccacagatggctgtttatgaagagttt
gctcgtaatattcctggtttccttcccagtcatgaaagggactcggtatcaaactatatt
tccaaacctctccaggttagccagtctttttctactgatgatattacacagatctatgac
aaggtaatagcagagcttgaccgctacattcagagcctgatggctattccagcaagccca
caagctgcagcacttcacagtctgagagaaggagtgtttcttgtacgaacatcaagagag
attgttacagctcttactcttgtccagaagacagtggaaagtcttctagaagggatgaca
cagcactcacctgatcctgaagttgctattcgttatcgtgatggccatctacttgtactg
aaagctctagctgatcccagggcattcggtacccaatggacagttaaacatgttactcga
gctctaattgaatgtcgtgatgattatcggtataacctggaaggtgtggattgtcttatt
cgcagccatttggtcaacatgccttcttatgatctgcatcttacccagcttatggaaggt
ggattgaattatcttgccgtagcttttgccatgcagctagtaaagctttatattgtggat
aaacgtcatgatggcttcttttcagagggtgatctttaccatacagtggaaatacttgct
cgaattgctactcactccagacagccaccagaaggtttgtcacagttaattgacatggtt
cagtgtgcatcacaggaatctggatttttagatcgtgcaccaggaggacccatgtctatg
atgcactctggaatctcccaagctcgtgaatacgatgaccctccagggcttcatgaaaaa
acagaatacctcttgcgtgagtgggtgaacatgtatcataatgcaagtgctgggagggac
agtaccaaagccttcactatgtttgttcatcagatgaatgtacagggaatattaaagact
gacgatttgattactagattcttcagacttagtactgaaatgtgcacagagctctgctac
agagccttctcagaccaatctaatccttccccatctttagtgcgagccaaatgttttcat
actttagatgcctatgtaaggttgatcacgttgctggtgaaacacagtggtgatgccaac
aatagtctcacaaagattaacttactccacaaggtccttggtattgttgctggtgtactg
cttcgagatcacgactttcggagcacagaattccaacagttaccctatcatcgaatcttc
attatgcttttccttgaactcagtgccccagaacaagtcttggagtctatcagtgttcag
gttctaaatgcattctgcaatactcttcacatcctacaaccttccaaagctcctgggttt
gcctatgcctggcttgaattagtatcacatcgagtgttcttagggaagatgttggtactc
actccacagcagagagcttggggcatgtatgctcagctgctgattgacatgttcaagttt
ttagcaccttttttaagaaatgtggagcttcccaaacagattcaacttttatacaaggga
acactccgtgttttgctggtgttacttcatgactttcctgaatttctctgtgattaccat
tatggattttgtgatgtcattccaccaaattgtatccaaatgaggaatcttattctcagt
gcatttccccgtcacatgagattgccagatcccttcactcccaaccttaaagttgacttg
ctaccagaaattacccaggcccctcgtgttctaactaactttgctagcatgatccagcca
gcaaacttcaagaaggatttagactcgtacatcaacagccgaagtccagtgaccttcctc
tcagagttgagaagtaacttgcaggtatccaatgaacctggaatgagatacaacatccca
ttaatcaatgctttagtcctgtatgttggtacacaagccattagtcacattcagactaag
ggacaggctccgagtatgggaacgatcacacattcttctcacatggacatatttcaaaat
ctggctgtggatctggatacagaaggtcgttacttgtttttgaatgcaataacaaaccag
cttcgctaccctaatagtcatactcactacttcagttgtaccctgttatacttgtttgct
gaagcgaacactgaagctattcaggagcaaatcaccagagttctactggagagattaatt
gtgaatagaccacacccttggggcctactggtcaccttcatagagcttatcaaaaaccca
accttcaaattctggaatcatgaatttgtgcgttgtgcccctgaaattgagaagttattt
gactctgtggctcgttcctgcatgcctcaaaaaccttcttctgacacagccagcacttga
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integrated database retrieval system
