Limulus polyphemus (Atlantic horseshoe crab): 106461319
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Entry
106461319 CDS
T08968
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106461319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpol03400
]
106461319
Enzymes [BR:
lpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106461319
DNA repair and recombination proteins [BR:
lpol03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106461319
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
DNA_ligase_IV
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
EABR
Motif
Other DBs
NCBI-GeneID:
106461319
NCBI-ProteinID:
XP_013776591
UniProt:
A0ABM1B7W0
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MSTVAENFPFRDLCMFCEKVANQRGKDKKRKILSQLISEWRNRHKELHKDDKNTTDSFFP
AMRLLLPQCERERAAYGMKEHFLAKILIKVQCLSEESEDSQKLLNYRAPKSAKDVAGDFA
SVAEFVFRKRCPPETSPSINLEEINKHFDDISINNVAKNKEEIKKTFRFLTHNISSRDLK
WLIRMILKEMKLGISEQTVLNTFHPDAKELFDVTSSLAKVCDRLKEPSLRLHEIEISLFS
PFRPMLAERADPSQVVKMMQHETFYIETKYDGERIQLHKNQNVYKYFSRSGNEYTKNFGS
CPLEGTITPYICNSFKNSVKNCILDGEMVGYNTRLKCIGSKAENFDVKNLGPDNDYQPCL
CVFDILLYNNKVLSNLSLRERLEYLKDVFEPVEGCIMHATREEASTEQECVQALNNAIDQ
REEGIVVKNPASIYRPSARKGGWMKVKPEYVPDLMNDLDLVILGGYFGEGRRRGIISHFL
LGLAVPGSCKEGKPQVFHSFTKVGSGYSICELYELVNKLNNHWQVYDKKNPPVSIVLASG
HKEKPDLWVEPSKSYIVQVKATEIIKSDRFKTGCTLRFPRVEKVRYDKPWFQCMTLSELE
DLKQQAQGKLAFQHLVGNESGETEPSPKKRRVPQRTDRICTIAPQFQPADVSGVKPVSAI
FSGKQMCVVIGLPEHSKQNLEKLIVEYGGSVVQNPDVDTFCVITSKVNLRVKNIISMNRY
DVVRAEWLLRCVEEKQFIPWTPFDLWSMREATQEQIAERYDSYGDSYTEETTVENLRKVF
DNIPEEIWKSHIPDPKSIADLEFDIFPAVSSYGLFRTFRIYIDNKAEIGEMGTVIPDHPL
ELVALKLRLHGGTICSSVDSETTHVVVHNSDTGRVARFKEVNRERTSGGKFHLVTEEWVE
GSIQKNRILTEKHFFP
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactgttgcagaaaactttccatttcgggatttgtgcatgttctgtgagaaagtt
gctaaccaacgtggtaaggataaaaaaaggaaaattctcagtcaactgatttctgagtgg
aggaataggcacaaagaacttcacaaagatgacaaaaatacaacagactcattttttcct
gcaatgcgacttctattgccacagtgtgagagagagagagcagcatatggaatgaaagag
cactttttagcaaaaatcttgataaaggtccagtgtttaagtgaagagtcagaggattct
cagaagttgttgaattatcgagctccaaaaagtgctaaggatgtagcaggagattttgca
agtgttgcagaatttgtgttcagaaaacgatgcccacctgaaacatctccatccatcaat
ttggaagaaattaacaaacattttgatgacatttctattaataatgttgctaaaaacaaa
gaggaaataaagaaaacatttcgttttctaacccataacatatcgtctcgagatttgaag
tggttaattagaatgattctgaaagaaatgaaacttgggattagtgagcagacagtgttg
aatacatttcatcctgatgctaaagaactttttgatgtaacaagtagccttgctaaggtt
tgtgatcgcctgaaggagccttcattacgtctacatgagatagaaatttctttatttagt
ccttttcgtcccatgttggcagaaagggctgatcctagtcaggtagtaaagatgatgcaa
catgagacattctacatagaaaccaaatatgatggtgaaagaattcaacttcacaagaat
cagaatgtatacaagtatttttctagaagtgggaatgaatacaccaagaattttggcagc
tgtcctttggaaggcactattactccatatatttgcaacagtttcaagaacagtgttaaa
aattgtatcttggatggagaaatggtaggctacaacactaggctgaaatgtataggctct
aaagcggagaactttgatgtgaaaaaccttggacctgataatgattatcagccatgtctc
tgtgttttcgacatcttgctttacaataataaagtgctgtcgaacttatctttacgagaa
agacttgaatatcttaaggatgtgtttgaaccagttgaaggatgcatcatgcatgctacg
cgtgaagaagcctccaccgaacaggagtgtgtacaagctctcaataatgcaattgaccag
cgagaggaaggtattgtcgtaaagaaccctgcctccatttatcgccctagtgctcgaaaa
ggtgggtggatgaaagtgaaaccagagtatgtgccagacctcatgaatgatctggatctt
gttattttgggtggttactttggagagggcaggagacgaggcattatctctcattttctt
ctgggcctggctgttccaggatcatgtaaagaaggaaagcctcaagtgttccattcattt
accaaggttggttcagggtactccatctgtgagctgtatgagctagtgaacaaactgaat
aaccactggcaagtgtatgacaagaagaatccccctgtttccattgtacttgccagtggg
cataaagagaaacctgacttgtgggtagaaccttctaagtcttacatagtccaggtaaaa
gcaacagagataatcaaaagtgaccgttttaaaactggctgtacacttcgttttcctaga
gttgaaaaagtacgttatgacaaaccttggtttcagtgcatgactctttctgaattggag
gacttaaagcagcaagctcaaggaaagcttgcttttcaacacttagttggtaatgaaagt
ggtgaaacagaaccatctccaaaaaagagaagagtacctcaacgaactgatcggatctgc
accattgctcctcagtttcaacctgcagatgtctctggtgtaaagcctgtatcggctata
ttttctggaaaacaaatgtgtgtggtgattggccttccagaacattcaaaacaaaatttg
gagaagctgattgtagaatatggaggatcagttgtacaaaacccagatgttgatactttt
tgtgttatcacaagcaaagtaaatcttcgtgtgaagaacatcattagcatgaaccgttat
gatgttgtaagagcagagtggttgttgcgttgcgttgaagaaaaacagtttattccctgg
acaccctttgatttatggagcatgcgagaagccacacaggaacaaattgctgaaagatac
gattcttatggagacagctatacagaggaaaccactgttgaaaacttgagaaaagtcttt
gacaatattccagaagagatttggaaaagtcatattcctgaccccaagagcattgctgac
ttggaatttgacatctttcctgcagtatcttcttatggattgtttcgaacttttaggatc
tacattgataacaaagctgagattggagaaatgggtactgttataccagatcatccccta
gaacttgtggcacttaagctccgtcttcatggcggaactatttgttcttctgttgactca
gaaacgacacatgttgtggttcacaatagtgacactggaagagtagcaagatttaaggaa
gtcaacagagaacgaacatcaggtggaaagtttcatttggtgacagaggagtgggtagaa
ggttctatccagaaaaatcgaattctaacagaaaaacatttctttccatga
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