Lacticaseibacillus rhamnosus ATCC 8530: LRHK_2512
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Entry
LRHK_2512 CDS
T01961
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lra
Lacticaseibacillus rhamnosus ATCC 8530
Pathway
lra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRHK_2512 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lra03021
]
LRHK_2512 (rpoB)
03400 DNA repair and recombination proteins [BR:
lra03400
]
LRHK_2512 (rpoB)
Enzymes [BR:
lra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRHK_2512 (rpoB)
Transcription machinery [BR:
lra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRHK_2512 (rpoB)
DNA repair and recombination proteins [BR:
lra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRHK_2512 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AER65251
LinkDB
All DBs
Position
complement(2456660..2460247)
Genome browser
AA seq
1195 aa
AA seq
DB search
MNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFLDEGLKEMFDDIMPIDDFQGKLSLE
FVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMTKQGTF
IINGAERVIVSQLVRSPGVYFHSETDKNSRVTYGTTVIPNRGAWLEYETDAKDIAYVRID
RTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRTDEALKDIYERL
RPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQVLAETLADPDTG
EVLAQKGTKVDRQVMDKLAPYLDRDDFKTVTYQPSDQGVMTDPIELQSIKVYSQVTPDKE
INLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGELLQNQF
RIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGEL
THKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYAVVNPY
GFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLARHKDNN
IEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHAPLVGT
GMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDTYKLMKFKRSNAGKNYNQRP
IVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVKDDVYT
SIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEVRDGDILVGKVTP
KGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSPGVNMM
VRVYITQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNI
GQVLELHLGMAARNLGIHVATPVFDGANDKDLWATVKEAGMPSDGKSVLYDGRTGEPFEN
RVSVGVMYYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
AYTLQEILTYKSDDVVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDMKVLGAD
KQEIELRDMDDDEDDVVSVDALAKFAAQQEEKKAHEAATQASDGQSADNSTDDKK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatggtaagcaccggacacgccggtcttatgcccggatcaaggaagttttggat
cttcctaatctgatcgagatccaaacgaattcttaccaatggttcctcgatgaaggtctt
aaagaaatgttcgacgatattatgccgatcgatgactttcaggggaaactgtcactggaa
tttgtcggctatcaactgctggaaccgaaatatactgtcgaggaagcacgccaacacgat
gcgaactactccgcaccattgcatgtaaccttacgtttgacgaatcatgaaactggcgaa
atcaagagccaggacgtcttttttggtgattttccattaatgacgaaacaaggaacgttc
attatcaacggggcagaacgggttatcgtttcccagctggttcgttctcctggcgtttac
ttccatagtgaaacagataagaattcacgggtgacgtatggcacgactgtcattcctaac
cgtggggcatggttggaatatgaaaccgatgcgaaggacattgcgtatgtccggattgat
cgcacgcggaagattcctctgaccgaattggttcgcgcattgggctttggctccgatcaa
gacattattaatatgttcggggataacgattcgttgatgctcacgcttgaaaaagatgtg
cataagaatacggatgattcccgtactgatgaagccttgaaggatatttatgaacgtcta
cgtccaggcgaacctaagactgctgattcatcgcggtcacttttgtatgcccgcttcttt
gacccgaagcgttatgacttagcctctgttgggcgttacaaggtgaacaagaagctgagc
ctgaagacccggctattgaatcaggttttagcggaaacactggctgatccggatacaggt
gaagtccttgcccaaaaagggaccaaagtggatcgccaagtgatggataagctggcaccg
tacttggatcgggatgatttcaagacggtcacttatcaaccttctgatcaaggtgtgatg
accgatccgattgagctgcagagtattaaagtttactcacaggtgaccccggataaagaa
attaatttgattggcaatgggcatattggcaagaaagttaagcatattttgccagctgac
gttttggcatcgatgaactacttcctgaacttgcaggagggccttggcacggttgatgat
attgaccacttgggtaatcgtcgtattcgttccgttggtgaattattgcaaaatcagttc
cggatcgggctttcgcggatggaacgggttgttcgcgaacggatgtcgattcaggacacc
gcaaccgttacaccgcagcaattgatcaatattcggccagttgtcgcttcaattaaggaa
ttctttggtagttcccagttgtcacagttcatggatcagaccaatccgttgggcgaatta
acccataaacggcgtctgtctgcccttggacctggtggcttgactcgtgatcgtgcgggt
tatgaagttcgagatgttcattacacccattatggccggatgtgtccgattgaaacccct
gaaggcccgaacatcgggctgattaacagcttggcttcatacgcggtcgttaacccatac
ggcttcattgaaacgccatatcgacgggtttcatgggatacgcataaggttaccgacaag
atcgattacctgacagctgacgaagaagataactacattgttgcgcaggcaaactcgcca
ctaaacgatgatgggtccttcgttgatgacacggttttggcccggcataaagataacaat
attgaaatttcaccagacaaagtcgactacatggacgtttcgcctaagcaggttgtcgca
gtcgcaaccgcctgcattccattcttggaaaacgacgactctaatcgtgcgttgatgggt
gctaacatgcagcgtcaggcggtacctttgatcaacccgcatgccccgcttgtcgggacc
gggatggagtacaaagccgcccatgactctggaaccgcggttttggctaacaatgccggt
acggttgaatatgtcgatgctaagcaaatccgggtacgtcgtgaagacggtgccttggac
acttacaaattgatgaaattcaagcgtagtaacgccggtaagaactacaaccaacgtccg
attgttacgatcggtgaccatgtcgatgtcgatgaaatcattgctgatggaccagccatg
caaaatggtgaattggcattggggcaaaacccaatcatcgccttcatgacttggaacatg
tacaactacgaagatgcgattgtgctgtctgaacggttggttaaagatgatgtttacacg
tcaatccatattgaagaatatgaatcagaagcacgtgacaccaaacttggacctgaagaa
gtcacgcgtgagattccaaacgttggtgaagaagccctcaaggatctcgatgaattcggg
gttgtccgtgtcggtgccgaagttcgggatggcgacattctggttggtaaagtaacgcct
aagggagtcacggaattatctgccgaagaacgcctgctgcacgcaatttttggtgaaaaa
gcacgtgaagttcgcgacacatcgctgcgggttccgcatggtggcggcggtattattcag
gacgtcaaaatcttcacccgtgaagctggagatgaattatctcctggcgtcaacatgatg
gtacgggtttacatcacgcagaagcggaaaattcaagttggtgacaagatggccggtcgt
catgggaacaaagggacggtttccgtcgttgtgcctgaagaagacatgccatacttgcca
gatggtaccccagtcgatatttgcttgtcgccaatgggtgtgccaagtcgtatgaacatc
gggcaggtgctggaattgcatctgggcatggctgctcgtaacttaggcattcatgttgca
acgccagtctttgacggtgccaacgataaagacttgtgggcaaccgttaaagaagccggc
atgccatctgatgggaagtcagtcttatatgatggccgtaccggagaaccatttgaaaac
cgggtatctgtcggtgtcatgtattacatgaagctatctcacatggttgatgataagatc
catgcgcgttcaattggaccttacagcttagttacccagcagcctcttggtggtaaagct
cagtttggtggccagcggtttggtgaaatggaagtctgggcccttgaagcttatggtgca
gcgtataccttacaggaaatcttgacttataagtccgatgacgttgttggccgagttaag
acctacgaagccatcgttaaaggcgatccaattccaaagcctggcgtaccggaatcattc
cgtgtgcttgtcaaggaattgcaagcgctgggacttgatatgaaggttctaggtgctgat
aagcaggaaatcgaattgcgcgacatggacgatgacgaagacgatgttgtttctgtcgat
gcattagcgaagttcgcagctcagcaagaagaaaagaaggcacacgaagccgcaacccaa
gcaagtgacggtcagtctgccgacaatagtaccgacgataagaaatag
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