Lolium rigidum (rigid ryegrass): 124653002
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Entry
124653002 CDS
T09103
Name
(RefSeq) transportin-1-like
KO
K18752
transportin-1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124653002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124653002
03009 Ribosome biogenesis [BR:
lrd03009
]
124653002
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124653002
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
124653002
Pre-60S particles
124653002
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
IBN_N
TPR_IPO5
HEAT
HEAT_GCN1
PDS5
HEAT_GCN1_C
TOR1L1_N
CLASP_N
Adaptin_N
TPR_DNAAF5
HEAT_IPO9_c
INT1_R3
Motif
Other DBs
NCBI-GeneID:
124653002
NCBI-ProteinID:
XP_047048010
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All DBs
Position
1:158801697..158811735
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AA seq
874 aa
AA seq
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MGKYWWRHIFNKLLKFPLAYMESAPNEAGSVNGVQNASNEKASGSDTQRCSKEEASAGGV
QRVPKRKGLLPDVQKATNQKASGNDIQRTSKKKASASGSKVVLNGKASLSNVQEVPQEKA
SDSNLADKKTTSDSAGFQKVLNWNMLVLAEPRRIRSHLRKVKDTLKYDTFEEVEEEKEIH
SWSSLSRAGFMFVLEPEKVTFFERLMVHHKYKIYNEGKNEYDPWGLIGKFGDISILKYDE
AYVIPLLMKLQIAAAEVARIWRPKKKMLSEICFMLNDRSDQPLWWKQRKYKKMKDFHCYL
VFILAHKEELSVQVRQAAGLVLTNNVQMKFDSLSPGCTHYIKSELLPCITTKNKAIRSTA
GTTIAVLFQWIRVAGWMELFKELYQCINSQDICKNEDALDVLLKITEIGAEHLNEAVRGL
PKRPIDVFIPILMKFMKFPHDNLRKLALGCVSNCIVLSPLPWSLDTSMDECLQQLSNLFN
DTSSDVREKVCSTWGQLIKVHPSRSKLLIKNIIESKLEAMKDSIKEVALKACQFWCAYCD
DSRPYGELKEFLPNLITTFLQNMVLTKEDSSHAVFEDLHPLKEVTIRENLDDVYTLDLRI
CSAAGLTGICGVLWDDAFPVFMSLIEAKMAQMDDRAWKEREAAVASIGAIAKAHVTKPRF
SQILALLIPPLDDNFSLVRFSTCRTISVCGKLIIEGLGHTTGDEQFMVFLMGLVRRTADS
DRIVKEAAIAALESLQEEIKTKQLQAEVQDALQSYIQVVEEKRWSEETTPQRAYLLFSRP
GPHLPGRKYIRSLCADQDAPGKNNNVISGEHRLGVVEAFAEAFGSMDAMVVDCYRQLIRW
YLPSLIAGAGFLVFRCHIHPNMLIVMYASWSRAR
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggggaagtactggtggcgccacatttttaacaaattactcaagttccccttggcctac
atggaatcagcccctaatgaagcgggttcagtcaatggagttcaaaatgcctctaatgaa
aaggcatcaggcagtgatactcagagatgctctaaagaggaggcttcagccggtggtgtt
cagagagtcccgaaaagaaagggtttacttccggatgttcagaaagccactaatcaaaag
gcatcaggcaacgatattcagagaacctctaaaaagaaggcttcagccagtggcagcaag
gtagtcctcaatgggaaggcttcacttagtaatgttcaggaagtccctcaagagaaggct
tcagacagtaatctcgccgataagaagactacttcagatagtgctggttttcagaaagtt
ttaaactggaatatgcttgtgcttgctgaaccgcggcgtatcagatcacacctgcggaag
gtcaaggatacactaaaatatgacacgttcgaggaagttgaagaagagaaggaaatccac
agctggtcatcgttgagccgcgcaggtttcatgtttgtattggaaccagaaaaagttact
ttcttcgagcggttgatggtacaccacaagtataaaatctataatgagggaaaaaatgag
tatgatccatggggtttaatcggaaaatttggtgatatttctatactaaagtacgatgaa
gcctatgtgatcccactcctaatgaagctccaaatagcagcagcagaagttgcaagaata
tggagaccaaagaagaaaatgctcagcgagatctgcttcatgttgaatgacagatctgac
caacccctctggtggaaacagcgtaaatataagaagatgaaggacttccactgctacctt
gtgtttatcctcgcccacaaagaggagctatctgttcaagtaagacaagctgctggtctt
gtactgacaaacaacgtccagatgaaatttgacagccttagtcctggatgcacgcattat
ataaagtctgagctccttccgtgcataactacaaaaaataaggccatcagatccacagcc
ggaacaacaatagctgttctctttcaatggattagagttgctgggtggatggagttattc
aaggagctataccaatgcattaatagtcaggacatttgtaaaaacgaagatgcacttgat
gttttactcaagatcaccgagattggtgctgaacatcttaatgaagctgttcgtggtttg
cctaaacggcctatcgatgtattcataccgattttaatgaagtttatgaagttccctcat
gataatcttaggaaactagcgcttggatgtgttagtaactgtattgtgctttctccactg
ccgtggagcctggatacatccatggacgaatgtcttcagcagttatccaacctcttcaat
gatacttcatcagatgtccgagaaaaggtttgttcaacctggggtcaactcattaaagtc
catccatcaaggtcaaagctactcataaaaaatattattgaatcaaaactcgaagctatg
aaagattcaatcaaagaagttgctctgaaggcctgccagttctggtgtgcctattgtgat
gacagcaggccttatggcgagttgaaggagtttttgccaaatctaataacaacgtttctg
caaaacatggtccttaccaaagaagatagctcacatgctgttttcgaggatttacacccc
ctaaaggaagtgacaattagagaaaatcttgatgatgtatacaccttggacttgcggata
tgtagtgctgctggtctaactggcatttgcggtgtcctctgggatgacgcttttccggta
ttcatgtccttaatagaggcaaagatggctcagatggatgatagagcctggaaggagagg
gaagcagcagtagcttcgataggtgctatagcaaaggcgcatgttaccaaaccaagattt
tcgcagattttggccctcttgataccaccgcttgacgacaatttttctcttgtacggttt
agtacttgtcggacaatttcagtctgtggcaagctcattatagagggccttggccatact
actggagatgagcagttcatggtgttcctcatggggttggtccgtaggacagcggattca
gataggattgttaaggaggctgccattgcagcacttgaatctctgcaagaggaaatcaag
acgaagcaactgcaggccgaagtgcaggatgctctgcagagctacattcaggtcgttgag
gaaaagagatggagcgaggagaccacaccacaacgagcatatctacttttttcacggccc
gggccccacctccctggaagaaagtacatacgcagcttgtgcgctgaccaagacgcacct
ggtaaaaataataatgtaataagcggtgaacatcggcttggagttgtagaggctttcgcc
gaggcctttggaagcatggacgccatggtggtagactgctaccgccaactgatccggtgg
taccttccgagccttattgccggcgccggctttttggtgtttcgatgtcacattcaccca
aatatgttgattgtgatgtatgcatcgtggagcagggcaagatag
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