Lolium rigidum (rigid ryegrass): 124701147
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Entry
124701147 CDS
T09103
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124701147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124701147
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124701147
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124701147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
124701147
NCBI-ProteinID:
XP_047089148
LinkDB
All DBs
Position
3:complement(8869867..8889242)
Genome browser
AA seq
2418 aa
AA seq
DB search
MVPLNPDVAAEVRLMLQGATDSASDSIRRELCQLVDCGIDGCLLLLQVCFDQVMLSAREV
DNFQLKHALLSAIFRYCLNKTYFSTCFCEALLPISDTDALLETLSNVLELSVAEKVGIGL
ALSDSDNSAMKLKGQQFAITQIEELCLNPNQSVSNDQVHEILVFLHQTDGLSKHMDTFSN
ITSLLEVRQSPFFAPFPIKQCDAQSTNPSRHLETYFASTNDDFESLLSEIGKEISLADIV
TELGYGCTVDSTQCKEILSTFEPLDDTAVSKLLGAVIGTQNSLGEAHNTYATFVSAIRNS
PMSESPQLTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFIVPDEAAFYLLMSIYGRAC
KEPFPLHAVCGSMWTNTEGQISFLKHAVSAPATIFTFAHCSRQLALPDFASLSPGNHAWF
CLDLLEVLCQLAEVGHTVSVRLMLEDPLGHCPDLLLVGLGHVNTAYNLLQFEVLSCAFPA
ILKDAAKSNVVNHLWHINPCLTLRGFVGAHSDPSCLLRIVDVCQDMKILSAVLDSTPFAF
SIRLAAAASRKDHSHLEKWLTEKLTLYNDSFLEECVDFMKETMNATSYAVEGATEQPQAN
AMDIYWEACPPFIKVLQSYSGQLLPNQLLDKLRELFTSYESRNHGSAVRDIPTPEGGSDD
VEVEANAYFQQMFSGQISVDAMIQMLSRFKESLDKREQAIFNCMISNLFEEYKFFTKYPD
KQLKLAAVLFGSLIKHQLVAHLGLGIALRAVLDALRKSVDSKMFVFGTTALEQFMDRVIE
WPQYCNHILQISHLRGTHAEMVSAIERALARISSSQNEPSIGNMFSADHLVSGSSSIETM
EASEPSWQLMGTSPTQLGRTPSYPLQQRQQSVLGDRSKVSMATSQNKTILPSQSSVPSAP
ADSATNIKTTVPPSALPHSTSMSTTAHATGFLRTRSTATGLPRQHSYTTGFGAALNIETL
VAAAEQRDRPIETPPSEVQDKVLFMINNISTSNMEAKAKEFDEVLQEQYYPWFAQYMVMK
RASIEPNFHDLYLKFFDKLNSRSLSKEMLKATYENCKALLRSDLIKSSSEERSLLKHLGS
WLGKFTIGRNQALRAKEIDPKSLIVEAYEKGLMIAVIPFTSKILEPCKSSIAYRPPNPWT
MGVLSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPTSLLKDRGREVEGNPDFSNK
DVASQTQVSVEVSSGINPPINHMELQPEVNNTSRAMSLPTILNQYAAPGRLPPNSMVEDE
KIALMMPEQFSSHTLAQVSPSQAPLASLSPSPLSLSQLLSLIPHDEIRFKINSKLGSLGS
QLQFSKIMGVALDKAIKEIILPVIERSVTIASKTTKELVLKDYAMESDYSAANRAARLMV
GTLAGSLAHVTCKEPLRVALSSHLRSLIQNLTSNSETVEQVIHILINDNLDLGCASIESV
ATRKAVDSIDGEITQSFSQQRKKREAAGPAYYDSFTYAQGPFAPVPEVLHTKPESAAQQR
VYEDFVHVWQSHSQNVSAAGSGSSGTSAVSSNFGGVPRAYSPNPAPASSAFLTAQTAPLT
SAQPTELLVSEELIPGAAQLYSDSTAQLGTSDSSAWLGGTIDAASTSPPLISNDLPVGGI
TDSSAVMSFPATVSVDNRGSVLPDALNTGDALERYGQVSQKMEALIAKDGKDGEIKSVIA
EVPDILLKCVNRDEAALAVAQKVFNSLYDNASNSGSIMLYVATLVAVRDVCKLVVKEITN
WVICLDDEKNFNFDIIFCLIRSELLNVGEYNVHLAKLIDGGRNKVAIEFGMSLVQTLITQ
DSAIISELHDVFEALSKISRRPGSPESLPQLLEIARSNANNAPGFAFGKDEKAIQSKDKK
VLFSRTNKEENSVNDTTHADSTAFQEQVAHLFSEWCQVCDHPSASDAAYSRYVMQLQHIG
LLKGDEFTERFFRVLTELAVAHSLISEQIVAPGGLSQHSSHISYLPIDSYSKLVSMVLKY
SSVEIGPNKGSLLSKILSVTVRVIQKDAEEKKTSFNPRPYFRLFINWLNDLTTSDVHHDG
ANFQQVLTAFANAFHALQPLRIPGLSFAWLELVSHRSFMPRLLTCNLQKGWPLFHGLLVD
LFKFMEPYLRNAELVEPVHLLYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPSSCIQMRN
VILSAFPRSMRLPDPSTPNLKIDLLPEITKAPRIMSDFEGALRSKHMKADVDEYLKRPDG
SSFLSDLKQKLLLPQNEASNAGTRYNVPLINSLVLYIGIQAVQQLQLNKANASAAAQQIN
HNQMDIFQIETATDFFRNLVTNLDTEGRYLLLNAIANQLRFPNNHTHYFSFIILYLFAEA
TVDNVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIHIAPEIKMLFES
VAKSCAGKAADDVPDGSH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atggtcccgctcaaccccgacgtggccgccgaggtgcgcctcatgctccagggcgccacc
gactccgcctccgattccatccgccgagagctctgccagttagttgactgtggtattgat
ggatgtcttctgctgctccaagtctgtttcgatcaagtcatgttgagtgccagggaggtg
gacaacttccagttgaaacatgctcttttatccgccattttcagatattgtctcaataaa
acatacttcagtacttgtttctgtgaggctctgttgcctatatctgatactgatgctctc
cttgagaccctgtcgaatgtcctggaactctcagtagctgagaaagttggtattggtctt
gcactgtcagattctgataattctgccatgaagctgaaaggacaacaatttgctatcact
caaattgaggagttgtgtttgaatcctaatcaatcagtatccaatgaccaagttcatgaa
attctcgtattccttcaccagactgatggcctgtcaaagcatatggatacttttagtaac
attacttctcttctggaagtcagacagagtccattttttgcccctttcccaataaagcag
tgtgatgctcagtcaacaaatccttcaaggcatttggagacgtactttgctagcacaaat
gatgattttgagtcacttctttctgaaattgggaaagaaataagtctggcagacattgta
accgaattgggttatggatgtacagttgatagcacacagtgtaaggaaattctttcaact
tttgagcctcttgatgacacggcagtgtctaagttgctcggggcagttattggcactcaa
aatagtcttggagaggcccataacacatatgcaacctttgtatctgctattcgaaatagc
cccatgagtgagtcacctcaattgactacatggaacacagatgttcttgtggattcaatc
aacgaacttgccccaagtactaactgggtgcatgtaatggaaaatcttgatcatgagggt
ttcattgttcctgatgaagcagctttctatttgctgatgtctatatatggccgtgcttgc
aaggagccctttccgcttcatgctgtttgtgggtcaatgtggactaatacagaaggccag
atatcatttttgaagcatgcagtgtctgctcctgctacgatatttacattcgcacattgt
tcgaggcagctggcacttccggactttgcaagtctcagtccaggtaatcatgcttggttc
tgccttgaccttctagaggttttatgccagctggctgaagttggacacactgtgtcggtg
cgattgatgcttgaggatcctttggggcattgcccagacctcttacttgttggtcttgga
catgtcaatactgcttataatctcctccaatttgaagtgctatcctgtgcatttcctgct
atactgaaggacgctgcaaagagtaatgtggtgaatcatctctggcatatcaacccttgc
ctcacccttcgaggatttgttggtgctcattctgatccaagctgtcttctaagaattgtt
gatgtgtgtcaagacatgaagatcttatctgctgtcctggattctactcctttcgcgttc
agcattagattggctgctgctgcttctaggaaagatcacagtcatctcgagaaatggctg
actgagaagttaactttatacaatgacagttttcttgaggaatgtgttgatttcatgaaa
gaaactatgaacgccacatcttatgcggtagaaggtgccacagaacaacctcaagctaat
gccatggatatttattgggaggcctgtcctccctttataaaggttctccagtcttactcg
ggacagctcttacccaaccaactcttggataaactaagggaattatttacttcgtatgaa
tcaaggaatcatggttctgcagtaagggacatccctaccccggagggcggttcagatgat
gttgaagtagaagcaaatgcgtattttcagcagatgttttctggacagatcagcgttgat
gctatgatacaaatgctcagtcgcttcaaggaatctctggataagcgggagcaagcgatt
tttaattgtatgatctcaaatctgtttgaggaatacaagttctttacgaagtatcctgat
aagcagcttaaattagctgctgtactgtttggatcccttattaaacatcaacttgtggct
caccttggacttgggattgctctacgtgctgttcttgatgccttgcgcaagtctgttgat
tcaaagatgtttgtgtttggcacaacagcgctagagcagttcatggatcgtgtaatagag
tggccacaatactgcaaccacatattgcagatttcacatctccgtggaactcatgctgaa
atggtctctgcaattgagcgagcccttgccaggatttcatcaagtcaaaatgagcccagt
attggcaacatgttttctgcagaccaccttgtttccggatcgtcatctattgaaacaatg
gaggcttctgaaccatcatggcagttgatgggtacctctccaactcagctaggaaggaca
ccttcttaccctttgcagcaaaggcaacagagtgttcttggggataggtccaaggtctcc
atggcaacctctcagaataagaccattttacccagtcaatcttcagttccttctgcacct
gctgattcagcaactaatataaagacaactgttccaccctctgcactacctcactctaca
agcatgtcaaccactgctcatgccactggttttctgcgcactcgaagtaccgccacaggc
ttgcctcggcaacattcgtacactacgggatttggagccgctttaaatattgagaccctt
gtagcagcagcagagcaaagagatagaccgattgagactcctccatctgaagttcaggat
aaggtcttgtttatgatcaacaatatatctacctctaatatggaagccaaggcaaaagaa
tttgatgaagtgcttcaggaacaatattatccttggtttgcacaatacatggtcatgaaa
agggcaagcattgaaccaaattttcatgatttgtacctgaagttctttgacaaacttaac
tcaagatccttgagtaaggagatgctgaaagctacatatgagaactgcaaggctttgtta
agatcagatcttatcaaatctagttctgaggaacgctcgttactaaaacatttgggcagt
tggttgggaaaatttactattggaaggaaccaggcactacgagctaaggaaattgacccc
aaatctcttattgtggaggcatacgagaaaggactgatgattgctgtaattccattcact
tcaaagattcttgaaccttgcaagtcaagtatagcatatcgtcctccaaatccgtggaca
atgggagttcttagtctacttgctgagatctataatctgccaaacctcaagatgaatctg
aaatttgacattgaggtcctgtttaagaatctcagcgtggacatgaaagatgtaaaaccc
acttcccttcttaaagaccgaggacgtgaagttgagggaaacccagatttttcaaacaaa
gatgttgcatctcaaacccaagtgtctgtagaagtctcttcgggcattaaccccccaata
aaccacatggaactgcagcctgaagtcaataacacttctcgtgccatgagccttcctact
atactgaatcagtatgctgctcctggacgtctacctcctaacagtatggtggaagatgaa
aaaattgctctaatgatgcctgagcaattctcttcgcacaccttggcccaggtctcacca
tcacaagcaccattagcatcactatcgccatcgcccctctctctcagtcagcttttgtcg
ttgattccacatgatgagatacgcttcaagataaattcaaaacttgggtctcttggctca
caattgcaattcagcaaaatcatgggcgttgctttggataaggctatcaaagagataata
ctccctgtcattgaaagaagtgtcacaatagcaagcaaaactacaaaagaactcgtcctg
aaggattatgcaatggaatcggattacagtgctgcaaatcgtgctgctcgtttgatggtc
gggacattagctggaagtttagcccatgttacttgcaaggaaccacttcgcgttgcacta
tcttctcatcttcgaagccttattcaaaaccttactagcaacagtgagaccgtggagcaa
gtaatccatattctaatcaacgacaatttggatcttggctgcgcaagtatcgagtctgtg
gcaacccgcaaggctgttgattcgattgatggcgaaataactcaatctttttcacaacaa
aggaaaaaaagagaggccgcgggtcctgcatattatgactcttttacttatgctcaaggt
ccatttgcccctgtacctgaagtactccatactaagcctgagtcagctgcccaacaacga
gtgtatgaggattttgttcatgtatggcagagccacagccaaaatgttagtgctgcaggt
tctggttcatctggtacatctgctgtctcgagcaattttggcggcgtacctcgagcttac
agcccaaatccagcaccagcttccagtgcttttttgactgctcaaacagctccgcttacg
tcagctcagcctacggagctgctggtgtccgaggaattgattcctggtgctgcacaacta
tatagtgattctactgctcaacttgggaccagtgactcttctgcctggcttggtggaacc
attgacgctgcatccacatctcctcctttgatatctaatgatcttcctgtggggggaata
acggattcaagtgctgtgatgtcatttccagctacagtttctgttgacaatcgtggatct
gttttacctgatgctttgaatactggtgatgccttggagagatacggacaagtttcacaa
aagatggaggccttgattgcgaaggatggaaaagatggggaaatcaagtctgttatcgcg
gaagttcctgatatcttactcaaatgtgttaaccgggatgaggctgcattagctgttgca
caaaaggttttcaacagcttgtacgacaatgcatcaaatagtggcagtatcatgttgtat
gtagcaactttagttgcggttcgagatgtctgcaagcttgttgtcaaagagatcacaaat
tgggtgatctgcttggacgacgagaagaattttaactttgacataattttttgccttatt
cgttccgaattgctgaatgttggggagtacaatgttcatttggcaaagctaattgacggt
ggaagaaataaggttgcaatagaatttggcatgtcacttgtccagacattgattactcag
gactctgctatcatctcagaacttcatgatgtttttgaggcactatcaaagatttcaagg
aggccaggttcacctgagtcgttgcctcagttgcttgagattgcaaggagtaatgccaac
aatgctcctggttttgcttttgggaaggatgaaaaagccatacagtcgaaggataaaaag
gttctctttagtcgaacaaacaaagaggaaaacagtgttaatgacaccacccatgctgat
tctactgcttttcaagaacaggttgcacacctattttctgagtggtgtcaagtatgtgat
cacccaagtgcttctgatgcggcatatagtcgttatgttatgcaattgcaacatattggc
ttgctgaagggagatgaattcactgagcgcttctttcgagttctcacggaacttgctgtt
gcacattctctaatctccgagcaaattgttgctcctggtggattgtctcaacactcatca
catatatcatatctccccattgattcatattcgaagcttgtgtctatggtgctaaagtat
tcttcagtggaaataggaccaaataaaggcagccttctttccaagatcctgtcagtgaca
gttagggtcattcagaaagatgctgaagagaagaaaacttcattcaacccccgaccatac
ttccggctgtttataaattggttgaatgaccttactacttctgatgtccatcatgatggt
gctaatttccagcaggttttgactgcatttgcaaatgcattccatgcactgcaacccttg
agaattcctggtttgagttttgcttggcttgagttggtgagtcatagaagcttcatgcca
agactgctaacgtgcaatttgcaaaaagggtggcctcttttccatgggctgcttgttgat
ctgttcaaattcatggaaccatatttgagaaatgctgaacttgtagaaccagtgcacctt
ttatacaaaggaaccatgcgagtactgcttgtactactacatgactttcctgaatttttg
tgcgactatcacttcagtttctgtgacgttatcccttccagttgcatccaaatgcgcaat
gtcattcttagtgcttttccacgtagcatgagacttccagacccatctactcctaacttg
aagattgatctgctacctgaaattacgaaagctccacgaatcatgtcagattttgagggt
gctctgaggtcaaagcatatgaaggctgatgtcgatgagtatcttaagagaccagatggc
tcttcctttctgagtgatctgaagcaaaaattgctgctgcctcagaatgaagctagcaat
gccgggacacgctataatgtgcctctgattaattcgcttgttctctacattggcatccaa
gcggtgcaacaactgcaactgaacaaggcaaatgcatctgccgcagcccagcagatcaac
cataatcaaatggatatttttcagattgaaacagccactgattttttcagaaaccttgta
acaaacttggatacagaggggcggtaccttcttctgaacgcaattgctaaccaattgcgg
ttccctaataaccacacacactacttctccttcatcattctgtatctatttgctgaagct
acggtggacaatgtccaggagcagataaccagggtcctcttagagcgactgatagtgaac
cgtccccatccttggggattactcattactttcatcgagctgataaagaaccctcgctac
aacttttggaaccgatcgttcatacatattgcgcctgagattaagatgctgtttgagtcc
gtggcaaagtcgtgtgctggaaaagctgcggatgatgtccctgatggcagccactag
DBGET
integrated database retrieval system
