Lolium rigidum (rigid ryegrass): 124706181
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Entry
124706181 CDS
T09103
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124706181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124706181
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
124706181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
TPR_16
TPR_8
TPR_11
TPR_CcmH_CycH
TPR_MalT
TPR-S
Motif
Other DBs
NCBI-GeneID:
124706181
NCBI-ProteinID:
XP_047093793
LinkDB
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Position
4:162265781..162273639
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AA seq
1009 aa
AA seq
DB search
MFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYFRKGVEQFRLALELAPHNHSAYFGL
ASALLAWSRHCVATGAFTWAANLLKEASEAAKACSSLTGNLSCVWKLHADTQLALARCFP
WEHGDIKWGMDEHTFKASVLEWRSTCLSAANGAKLSYQRALHLTPWEANIHIDTAACLDL
ICTMEENNSVDPITWELPEKMSLGGLMLEPVNKDFWVTLGLVSSNQALKQHSLIRALHLD
MSLSEAWAYLGKIYRQSGHKQLARQAFDRARSIDPSLALPWAGMSAEDHNQYGAGAVNES
YESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHYPESHNISGLVA
EVRSDFQSAIASYQQAKFALDMMCRSKLDNRYPFVDVSLNLARSLCKAGLATDAARECEE
LKTKGLLNVDGLQTYAFALWKLGRHDEALSVSRNLAENLPSMKQESATGALGFICTLAYN
ITGKDSAALVIHTLPGQPSYNRELKFIISALDALQPTKRFQLPQLSTPPRLTSYEVMSEV
HSNIALGKAIGGESNSCLGVEGGLSYLKKVLHMYPDCSLVRNHLGSLLLSGGDWTASHKA
VRVTSLSHGHTSNRGLRSPHQIQASATVSCYATCTSYPKFSFPTCEDQYLSQYNALCNLQ
RLVHQEPWNQDARYLLVLAIFQKAHEEKYPKHISTILKRLILQVLSSRSNSEENKIVLYE
KYLLLLLSSEISLQSDDHANCITQATDALRVTSPSADAFFAHLQLCRAYVVQGDLSSSRK
EYMKCLQNRTNTEIGWVMLKQLESLCSPSPGSDEIEINLKECIERKGSNPSKWASLFNLA
CAQSSMRVEDFASAEKALAQACAEKDADSCILFLNGAMNMEIARRYAAPQFINRAASSLR
KAQQKSQATVPIVSLLLAQAEGSLGSKTKWEKNLRLEWFTWPPELRPAELYFQMHLLASQ
LTAAAAPQQKQQLLLPETMQSPGAWLLRAIHQNPSCSRYWKALEQVVYV
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgtttactgctgcagtaaagtcatatgggcgtgctattgaactcgatagttccagggta
tttgcgttgattgaaagtggaaacatccagctgatgcttggttatttcagaaagggagtt
gaacagtttcgtttagctttggagttggctcctcataatcattctgcatactttgggctt
gcttctgcattgcttgcttggtcaaggcattgtgtagctactggggcgtttacctgggca
gctaatctgttaaaggaagcatcagaagctgctaaagcttgttcttccttgactggaaat
ctttcctgtgtttggaaattgcacgcagacactcagcttgcacttgcaagatgctttccg
tgggagcatggggatatcaagtggggcatggatgaacatactttcaaagcttctgtcctt
gagtggagaagtacatgcttgtcagctgcaaatggtgcaaaactctcatatcaacgagct
ttgcatctcacaccttgggaagctaatattcacattgatactgctgcttgtcttgatctc
atttgtaccatggaggagaataactctgtagacccgataacttgggagcttccagagaaa
atgtcgttgggtggtttgatgttggaaccagttaataaggatttctgggtcacattgggt
ttagtgtcaagtaatcaggctttaaagcaacattctcttatcagggcactgcatttggat
atgtctctctctgaagcttgggcataccttggaaagatttacagacaatcaggtcacaag
caattagcaagacaagcatttgaccgagctcgaagcattgatccttcattggccttgcca
tgggcaggaatgtcggcagaagatcataaccaatatggggctggtgcagtaaacgagtct
tatgaaagctgcttgagagctgtgcagatactacctctgccagagttccagattggcctt
ggaactattgctgctcgttctggtgaacttctgtcacctcaggtattgatggctgtaaga
caggctgttcagcgagcgcctcattacccggagtcacacaatataagtggattggttgct
gaagtccgatcagactttcaatctgcaatcgcatcttaccaacaggcgaaatttgcttta
gacatgatgtgcaggtccaagttagacaacagatatccttttgttgatgtttcgctgaat
cttgcccggtcactttgtaaggctggtcttgcaactgatgcagcacgggagtgcgaagag
ttgaaaacaaaagggttgctgaacgttgatggattacagacatatgcttttgcattgtgg
aaacttggacggcatgacgaagctctctctgtatcaagaaacttggctgagaatttacct
agtatgaagcaggagagtgcaactggagcattgggattcatatgcaccttggcatacaac
atcaccgggaaggattctgcagctttagtcattcatacactccctggtcaacccagttat
aacagagagttgaaattcatcatctctgcattagatgctttgcagccaactaagcgtttt
cagttacctcaattgagtacgcctcctagacttacatcctatgaggtgatgagtgaagtc
cactcaaatattgctctggggaaggcaattggtggggaatcaaacagctgtttaggggtc
gagggtggtttgtcttacctgaaaaaggttctgcacatgtatcctgattgcagtttagta
agaaaccatcttggatcgctgctgctgtccggtggagattggactgcttctcacaaagca
gtaagggttacttcattgtcccatgggcatacatccaatagaggcctaaggtctccgcat
caaattcaagcatctgcaacagtgtcttgctatgctacctgcacttcttatccaaagttc
tcattcccaacatgtgaagatcagtacttgagtcagtacaatgcactatgcaacctgcaa
aggttggttcatcaggaaccatggaaccaagatgcacggtacctgcttgtacttgctatt
ttccaaaaggcacatgaagagaagtaccccaaacacattagtaccatcttgaagaggttg
attctacaagtactgtccagcagaagcaattcagaagagaataaaatcgtcctttatgag
aagtacttgctactcctattgtcttcagagattagtttgcaatctgatgaccatgcaaac
tgcatcactcaagctacagatgctctaagagttacttctccaagtgcggatgctttcttt
gcacacttgcaactgtgtcgggcttatgtggtgcaaggtgatctttcaagctccaggaag
gagtacatgaagtgcttgcagaaccggacaaatactgagattggctgggtaatgctgaag
caactagaatctctatgttcaccgagccctggctctgatgaaatagagataaatctcaaa
gagtgcattgagaggaagggtagcaacccatcaaaatgggcatctctttttaatctagca
tgtgctcagtcctctatgcgggttgaggactttgcaagtgctgaaaaagctcttgcacag
gcttgtgctgaaaaggatgctgatagctgcatcttatttctcaatggagctatgaatatg
gaaattgcccggaggtacgcagctcctcaatttataaaccgtgcagcttcgagcctcaga
aaggcacagcagaaatctcaagctactgtacccatcgtatcactcctactggcccaagca
gaaggcagccttggctccaaaaccaaatgggagaaaaaccttcgcctcgaatggttcaca
tggcccccagaactgcggcctgcggagctctacttccaaatgcatctgctggcgagccag
ctgactgcggcagcagctcctcagcagaagcagcagttgctgctgccggagacgatgcag
agccctggtgcgtggcttctcagggcgatacaccagaacccgtcgtgctccaggtactgg
aaggccttggagcaggttgtgtacgtgtaa
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