Lolium rigidum (rigid ryegrass): 124706238
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Entry
124706238 CDS
T09103
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124706238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124706238
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124706238
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124706238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
124706238
NCBI-ProteinID:
XP_047093847
LinkDB
All DBs
Position
4:complement(166027426..166051099)
Genome browser
AA seq
2390 aa
AA seq
DB search
MIPFSSAVAAEVRSLVQGADGSTLDSIYRELCQLADCSPDGCILLLQVCLDEVLLSVGVA
QNSQSKQYLLATIFRYCLDKPYFSTCFCEALKTVSVSDVFLETLSNELDLSRAEKVGIGL
SLSDSENIGLNLKGQRFSIAQIEELCENPAQHISNDQIHDIVVFIHRTDGLSKHMDSLTN
IISLFKVKDTPFHVPLPIQDGNVWPASRHTELCAGSLDDDFDSLLSEIGKEISMADIITE
LGYGCTADIAHCKDVLALFEPLNDLGISKLLGAVVSTTLGLDEANNTYSTFISAFGNSQT
SDSIQSTAWNINVLVDSINETAPRTNWTTVMENLDHEGFNIPDEGAFRLLMSIYSRACKD
PFPLHAICGSLWKNLEGQLSFLKHAVAAPVHTFTFKHCSRKMVFPELANIQDNQAWYCLD
LLEVLCQLAELGFATSVRSMLDYPLSHCPEVLFLGVSHINTAYNLLQYEVLSCVFPAILK
DTKHNSLLKYLWHLNPSLTLRGFVDAHSDISCLLRIVDICQDLKVTQILSTVLDFTSLAF
SIKLATVSFRNDNSNLEKWITEKLSAQREAFIEECIKFLKEIVVNTTYDAEEGVIQQSEA
TIANICWESCPLFIKVLQSHSGQLLTNQLVDELSRVGAAYESRNHGAVGRKIPTPEGGSD
DIEAQANIYFHQMFSEQISTDAMIQMLARFKESTNKRELAIFNCMISNLFEEYKFFPKYP
DTQLKLAAILMGSLIKHQLVAHLGLGIALRNVLDALRKSIDSKMFMFGTAALEQFMDRLI
EWPQYCNHILQISHLRGTHAELVSAIERALANISSSQNEPNSSSIFPVDQHGSGSPSIGS
IEASEASWQFINPPTQLERSPSSFPLQQRHQGFLGERSKGSTNSIQAKNILSVSQPFSSI
PADSSITQKVTASPSSQSSPHHSTTISTPSQSTNFLRPRSSAPSGTRSSYTTGFGAALNI
ETLVAAAERRDTSVEAPPSEVQDKIFFMINNISISNLEAKAKEFNEVFQEQYYPWFAQYM
VMKRASIEPNFHDLYLKFFDKVNSKLLNKEMVKATYENCKALLQSDLIKSSSEERSLLKN
LGSWLGKLTIGRNQTLRAKEIDPKILIVEAYERGLMIAVVPFTSKILEPCHSSIAYRPPN
PWTMGILSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSFLKDRIRQIEGNPDF
SNKDVSASQTPVVAEVSSGMIPAKNLVEVQPELISTSRSTSLPNMLNQYAPPLRLPPNSM
VEDDKVALRMPDQISPSQTSSPSPALFTLSQLMAAIPRADIYFRINEKLSSLGSLQYSKI
MDVALDKAIKEIIGPVIQRSVTIATRTTKELIIKDLAMESDDSAVSRAAHLMVGTLAGSL
AHVTSKEPLRVALSSHLRSLIQNLNNNSESTEQIVHILINDNLDLGCALIETVATRKAVE
MIDGEIKQPFSQLRRQKELLGSGYYDAFPYTQGLARVPDALRPKPAGLLCATQQRVYEDF
ITVWHSQSSQNAGATTSATALTVAPGNSSIPRLYSPNLVQPSDLVPEESDHGTTQLLSVS
TQLGASDTFAPTSLTSVFPSMSSNDAPVGEPTVATENCYQDLGSTTPLSPTAAVDRMESV
FAEPLNTEDALERYQQVALKIEALIASDGKDSEIQSVIAEVPDILYRCVSRDEAALAMAQ
KVFRNLYENASKGTSVTGILATLVAICDVCKLVVKEITSWVMYCDEDKKFNVDIITGLIR
SEILNLGDYDVHLAKIIDSGRNKGATEFAISLVQTLITQEPNGVSKLYNVVDVLSKLAIG
PGSPELLQQLIEIARSNFNNSASFAAMKDEKVLSGRASMYKEENDTALPDGVSFQDQVAV
LFSDWCHIYDHPIMGDSEYSHYIAQLQQHGLLKGDDLTDRFFHILTELAVTHTVVSEQLI
APGGIPQQPAQQLQISYFSIDSYSKLVTLVFKYCVNIAPNKGSLLPKILFVTARTIQKDA
EEKKVSFNPRPYFRLFINLLSELSTADLHDAATFQVLTAFANAFHVLQPLRVPAWSFAWL
ELVSHRSFMPKLLLCNSQKGWPLFQRLLVDLFKFMEPYLRNAEMGQPIHLLYKGTLRVLL
VLLHDFPEFLCDYHLSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLPEISK
APRIMSDVESALKAKQMKTQVDEYLKRPEGSSFLTDLKQKLLLPLNEANVAGTRYNVPLI
NSLVVYVGIQAVQQLQHNKANASAQQINQSSQVEIFQIETATEVFQNLIVNMDTEGRYLV
LNAIANQLRYPNNHTHYFSFIILYLFAEATQDIVQEQITRVLLERLIVNRPHPWGLLITF
VELIKNPRYSFWARPFTHCAPEIERLFESVARSCGGKAVDEGVVLADGSH
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttcagctcggccgtcgccgccgaggtccgctccctcgtccagggcgccgac
ggctccaccctcgattccatctaccgcgagctctgccagttagcagactgcagtcctgat
ggttgcattttactgcttcaagtttgtctcgatgaagtgctgctgagtgttggggtggca
caaaattcccaatcaaaacaatatcttttagccactattttcagatattgtctggataaa
ccatacttcagcacctgtttttgtgaagcactgaagacagtctctgtcagtgatgttttc
cttgaaacattgtcaaatgaacttgatctatcaagagctgagaaggttggtatcggactt
tccctgtcagattctgagaatataggattgaatctgaaaggccaaagattttcaattgct
caaatcgaggagttgtgtgaaaatcctgcacaacatatatcaaatgaccaaattcatgat
attgttgtgtttattcaccgtactgatggcctctcaaagcacatggattctcttactaac
attatttccctattcaaagtcaaagacacgccattccatgttcctctccctattcaggat
ggcaatgtttggccagcttcaagacatacagagctatgtgctggtagcttagatgatgat
tttgattcccttttatctgaaattgggaaagaaataagcatggctgacatcattactgaa
ttgggctatggatgtactgctgatattgcacattgtaaagatgtactagcactttttgag
cccctcaatgatttgggaatatctaagttgcttggggctgttgtttccactacccttggt
cttgatgaggctaataatacgtattcaacattcatttcggctttcggcaacagccaaaca
agtgactcaattcaatcaacggcatggaatatcaatgttcttgtggattcaattaatgaa
actgccccaagaactaactggaccactgtaatggaaaaccttgaccatgagggtttcaat
atcccagatgaaggagcttttcgtttattgatgtctatatattcccgggcttgcaaggat
ccatttccccttcatgccatctgtggatcactgtggaagaatttagaagggcaattatca
ttcttgaaacatgcagtggccgcccctgttcatacatttacatttaaacattgttccagg
aagatggtatttcccgaattggctaacatccaagacaatcaggcttggtactgcctagac
cttttggaggtgttatgccagcttgctgagcttgggtttgcaacatcagtgcgatcgatg
ctggactatccactaagtcattgtccagaagtcttatttcttggtgttagccacattaat
actgcgtataatctcctccagtatgaagtactgtcttgtgttttccctgctatactcaag
gacactaaacataacagtctattgaaatatctctggcatctcaacccttctcttaccctt
cgaggatttgttgatgcccattctgatataagttgtcttttgagaatcgttgatatatgt
caagacctaaaggtaacacagatcctatctacggtccttgattttacttctttagcattt
agcatcaaacttgctacagtttcctttcgaaatgataatagcaaccttgagaaatggatc
actgaaaagttgagtgcacagagagaggcttttattgaggaatgtattaaattcttgaaa
gaaattgtggtcaatacaacttatgatgccgaagaaggtgtcatccaacaatctgaagct
acaatcgcgaatatttgctgggaatcttgtcctctatttataaaggttcttcagtctcac
tcagggcagctgttgactaaccaactggtggatgaactaagtagagtgggagctgcatat
gaatcaaggaatcatggtgctgtaggaaggaaaattcctactcccgagggaggttctgat
gacattgaagcacaggcaaatatatattttcaccagatgttttcagaacagataagcact
gatgctatgatacaaatgcttgcacgcttcaaagagtctacaaacaagagggagctagca
attttcaattgcatgatctcaaacttgtttgaagagtacaagttcttcccaaagtatcca
gatacacagcttaagttagctgctattcttatgggctcgctcattaaacatcaacttgtg
gctcacctgggacttggaattgctctacgtaatgttcttgatgccttgcgtaaatctatt
gattcaaagatgtttatgttcggtacggcagctctcgagcagttcatggatcgtctaata
gagtggccgcaatactgcaaccatatattgcagatctcacatcttcgtggaacgcatgcc
gaattagtctctgcaattgagcgagcacttgccaatatatcatcaagtcaaaatgaacca
aatagtagcagcatatttcctgtggatcagcatggttctggttcaccgtctattgggagc
atagaggcttctgaagcatcatggcagttcattaatcctccaacacaactagaacggtcg
ccttcttcttttccactgcaacagaggcaccagggttttcttggggagaggtccaagggt
tctacaaacagcattcaagctaagaacattttatctgtcagtcaacctttttcttcgata
cctgctgattcgtctattactcaaaaggttactgcgtcgccatcctcacaatcttctccc
caccattctaccactatttcaactccatcacaatctactaattttctgaggcccagaagc
tcagctccttcaggcactcgatcttcgtacacaacaggatttggagctgctttaaatatt
gagactcttgttgctgcagcagaacgacgagatacatcagttgaggcccctccctctgaa
gttcaagacaagatttttttcatgatcaacaacatctccatttctaatttggaagctaag
gcaaaagaatttaatgaggttttccaggaacagtactatccttggtttgcacaatacatg
gtcatgaaaagggcaagcatcgaacctaattttcatgacttgtatttgaagttcttcgac
aaagtgaactcaaaattgttgaataaagaaatggtgaaagctacatatgagaactgcaag
gccttgttgcaatcggatcttatcaaatcaagttctgaagagagatcgctgctaaaaaat
ctgggtagttggctaggaaagctcactattggaaggaatcaaacattacgagcaaaggaa
attgaccccaaaattcttatagttgaggcatacgaaagggggctgatgattgcagtagtt
ccgttcacttcaaagattcttgaaccttgccattcaagtatagcatatcgtcctccaaat
ccatggacaatgggtattcttagcctacttgcagagatctataatctaccaaatctcaag
atgaacctgaagtttgacattgaggtcttgtttaagaacctcagtgtggacatgaaggat
gtaaaaccatcttcttttctgaaagatcgtattcgccaaattgaaggaaatccggatttt
tcaaataaagatgtcagtgcatctcaaacaccagtggttgcagaggtttcctctggtatg
attccagccaaaaatcttgtggaagtgcaaccagagttaattagtacctcccggtctact
agcctcccaaatatgttaaaccagtatgcaccacctcttcgtcttcctccaaacagcatg
gtagaagacgataaggttgctttaagaatgcccgatcagatttcaccttcgcagacatcg
tctccatcgcctgctctgtttactcttagtcagcttatggcagcgatcccacgcgcggat
atatatttcagaattaatgaaaagcttagctctcttggttcactacaatatagcaaaatc
atggatgttgctttggataaggctattaaagaaattataggccctgttattcagagaagt
gttacaatagctacccgaaccactaaggaacttattattaaggatttagcaatggaatct
gatgacagtgccgtatctcgtgctgcacatttgatggttggcacactagctggaagtctt
gctcatgtaacttccaaggagcctcttcgtgttgctttgtcgtctcatcttcgaagtctc
attcagaacctgaataacaacagcgaaagcactgagcagattgttcatattctgatcaat
gacaatctcgatcttggctgtgccctaatagagactgttgcgacacgcaaggctgttgag
atgattgatggagaaatcaagcagcccttttcacagctaaggaggcagaaagagttactt
ggttctggatattatgatgcttttccttacactcaaggtcttgcgcgtgtcccggatgca
cttcggccaaagcctgctggtcttttatgcgctacccaacaacgagtttatgaggacttc
attactgtatggcacagccagagtagtcaaaatgctggagctaccacttctgctacagcc
ttgactgttgctccgggcaattccagtatacctcgactgtatagcccaaatttggtacag
ccatcagatctggttccggaagagtccgatcatggtactacgcaacttttaagtgtttcc
acacaacttggtgcaagtgacacttttgcccccacaagccttacatctgtattcccctct
atgtcatctaatgatgccccagtgggtgaaccaacagttgcgactgaaaactgctaccag
gatctaggttcaaccacacctctttcacctacggctgctgttgatcgcatggaatctgtt
ttcgctgaacctctgaatactgaagatgcattggagagataccaacaggttgcactgaag
attgaagccttgattgccagtgacggtaaagactcagaaattcagtctgttattgcggaa
gttcctgatatcttatacagatgtgtaagtcgagatgaagctgcattagctatggcacaa
aaggttttcagaaatttgtatgaaaatgcatcaaagggtacttctgttacagggattcta
gcaactttagttgcaatatgtgatgtttgcaaacttgttgttaaagagataacaagctgg
gtaatgtactgtgatgaagataagaagtttaacgtcgacataattactggattaattcgt
tctgagattcttaatcttggagattacgatgttcatctagcaaagatcattgatagtgga
agaaacaagggtgcaacggagtttgctatatcacttgtccagacattgatcactcaagaa
cccaatggcgtctccaagctttataatgttgtcgatgtattatcaaagcttgcgatcggg
cctggttcaccagaattgttgcagcagttgattgagattgcaaggagtaatttcaacaac
tctgctagctttgctgccatgaaggatgaaaaggttttatctggccgcgcttcgatgtat
aaagaagaaaacgatactgctttaccagatggtgttagttttcaagaccaggttgcagtc
ttattctcagattggtgccacatatatgatcatccaattatgggtgattcagaatatagt
cattacattgcgcagttgcaacaacatggcttgcttaagggagatgatttgactgaccgc
ttcttccatattctcacggaacttgctgtcacacacactgttgtctctgagcaacttatt
gctcctggtggaatacctcagcaacctgcccagcaactccagatttcatatttctcgatt
gattcatattcgaagcttgtgactttagtgttcaagtactgcgtgaatatagcaccaaat
aaaggcagccttcttccgaagattctcttcgtaactgctaggaccattcagaaagatgct
gaagaaaaaaaagtttctttcaaccctcggccatattttagattatttataaatttgcta
agtgagcttagtaccgctgaccttcatgatgctgctacttttcaggttttgactgcgttt
gcaaatgcattccatgtgctgcaacctctgagagttcctgcatggagctttgcttggctc
gaattggtaagtcatagaagcttcatgccaaagttgctgctgtgcaattcacagaagggc
tggccattattccagaggctgcttgttgatttgttcaaattcatggaaccatatctaaga
aatgctgaaatgggacaacctattcatcttttatacaagggaactttgagagtgctactt
gttctactccatgacttccctgaatttctttgcgactaccacctcagtttctgtgatgtg
attcccccaagctgcattcaaatgcgcaatgttattctgagtgctttcccacgcaatatg
agacttccagatccctctactcctaatttgaagattgatctgctacctgaaatttcaaaa
gctccaagaatcatgtctgatgtggaaagtgctttaaaggcaaagcaaatgaaaactcag
gttgacgagtacctcaagagaccagaaggttcatcctttttaaccgatttaaagcagaag
ttactgctgcctctaaatgaagcaaatgtggctggaactcgttataatgttcccttgatt
aattcgcttgtcgtttatgtcggcatccaggctgtgcaacagttgcagcataacaaggcg
aatgcatcagcacagcaaatcaaccaaagttcccaggtggagatttttcagattgaaaca
gctaccgaggtcttccagaatctgatagtgaatatggatactgaaggccgttacctcgtc
ctgaacgcaattgctaaccaactgcgctatccaaacaatcacacccattacttctccttc
atcattctgtacctgtttgctgaggcaacacaggatattgtacaggagcagataacaaga
gttcttttagaacgtctaatagttaaccgtcctcatccgtggggattactaattactttc
gttgagctcataaagaacccacggtacagcttttgggctcggccctttacacattgcgca
cccgagattgagaggttgttcgagtctgttgcaaggtcttgtggaggaaaagctgtggac
gagggagttgttttagctgacggtagccattag
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integrated database retrieval system
