Limosilactobacillus reuteri subsp. reuteri DSM 20016: Lreu_0244
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Entry
Lreu_0244 CDS
T00535
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lre
Limosilactobacillus reuteri subsp. reuteri DSM 20016
Pathway
lre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lreu_0244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lre03019
]
Lreu_0244
03009 Ribosome biogenesis [BR:
lre03009
]
Lreu_0244
Enzymes [BR:
lre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lreu_0244
Messenger RNA biogenesis [BR:
lre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lreu_0244
Ribosome biogenesis [BR:
lre03009
]
Prokaryotic type
rRNA helicases
Lreu_0244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
LidA_Long_CC
DeaD_dimer
DD_DDX21-DDX50
Cas3-like_C_2
NAT10_TcmA_helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABQ82514
UniProt:
A5VI40
LinkDB
All DBs
Position
279389..280885
Genome browser
AA seq
498 aa
AA seq
DB search
MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII
ENVDTENLNIQAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHP
QILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLF
SATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRV
RMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLVAALLNN
MTKEAASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGGGHRNDNH
GKSHSSRHAFNIRHRKED
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggcttatccgatagcctattaaaagcaatcaaacggagcgga
tacgaagaagcaacaccaatccaagaacaaacgattccaatggttcttgaaggtaaggat
gttattgggcaagcacaaacagggactggtaagacggctgcttttggattgccaattatt
gaaaacgttgatactgaaaatctcaatattcaagcaattatcatttcaccaacacgtgaa
ttagcaatccagactcaagaagaactttatcgtcttggtaaagataaacatgttcgcgtg
caagtagtatatggtggggcagatattcggcgccaaattaagagcttgaaacaacaccca
caaattctcgtggggacccctggacggttacgtgaccatattaaccgtcatacagttaaa
cttgaccacattaagacccttgtcctcgatgaagcagatgaaatgctaaacatgggattc
ttagaggatattgaatcaatcatcaaggaaacaccagatgatcggcaaacattgctcttc
tcagcaaccatgccaccagaaatcaagcggattggagttcaatttatgtctgatccggaa
actgtgcggatcaaggccaaagaattgactactgacttagttgatcagtactatattcgc
gcgcgtgactatgaaaagtttgacatcatgacccgtttaattgacgttcaagatcctgac
ttaacaattgtctttggtcggacaaagcggcgggtagatgaattgtcgaagggcttgatt
gcgcgtggctacaatgcagctggtattcatggtgaccttactcaagataagcgttctaag
atcatgtggaagtttaagaacaatgaacttgatatcttagttgcaacagatgtggctgct
cggggcttagacatttccggggttacgcatgtttataattatgatattccatctgaccca
gacagctatgttcaccggattggccgaacaggacgggccggacatcacggggtatcctta
acctttgttaccccaaatgagatggattaccttcatgagattgaaaaattaacccgggta
cggatgctgccacttaagccaccaacagctgaagaagcatttaagggtcaagttgcctca
gcctttaatgatatcgatgaattaatcgcgcaggattcaactgatcgttatgaagaagcc
gctgaaaagctactagaaactcataatgcaactgatctggtagcagcattgttaaataac
atgacgaaggaagcggccagtgaagttccagttaagattactcctgaacgtcctctccca
cggcgtaacaagcggaataaccgtaatggcaaccgaaataattcgcatggtggcaaccac
taccggcgtaagaatttccgccgtcaccaacatggtggtggtcaccgaaatgataaccat
ggaaagagccattccagtcgccatgcatttaatatccgtcatcgaaaagaagattaa
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