Lethenteron reissneri (Far Eastern brook lamprey): 133340393
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Entry
133340393 CDS
T09663
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133340393 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133340393 (CNOT1)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133340393 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133340393 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
133340393
NCBI-ProteinID:
XP_061404546
LinkDB
All DBs
Position
9:complement(594350..623864)
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSLALSQIGYLVDNLTKKNYKTSQQEISHLVSNHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECIALITKPNFVSTLCYAIDNPLHYQKSLRPSPHLLTQLSKVLK
LSKVQEVVVGLALLNSSNQDLQGFAGQFVKQKLPDLLRSYVDSEVGGQQEGGFQDIAIEL
LHLLLSLLLYGPRGTFCVAQEQLQAFLQTLRKDFPRERCPVVLSPLLYLDKADLLMDRLL
PDTSGMAKTSMEGSLADLMQEVGYSCCSSIDECRTLIVQFGVRDVQALQVARVLGMMARS
HSSLTDGMPLQSICGPGGSIWSDGKDKSESTQTHTWNVEIFIDVVKDPNLHINFKEVAYE
LDHPGFQIKDGKGLQIVVYGIQKGLGMDVFPVELVYRPWKNTDGQMSFIQHSLLNPDVFC
FADYVCHTVVTDILKAPPEDDNREIATWKSLDLMETLLRLAESGHYEQVKQLFSFPLKHC
PDLLVLALLQINCTWNTLRHDLISLLMPIFLGNHPNSAIILHYAWHGQGQSPTIRQLIMH
AMAEWYMRGEQYDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLAVLASRREYLKLDKW
LTDKIREHGEPFIQACVSFLKRRCPSIMGGLPPEKDQPKSAQLPPETLAAMLACLQACAG
NVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRVSSTSTLDSISPVQVRTPERLDAL
SSIASLNISGAAPAHAGGMQAFPPNLGQTFNAPPSPAKAFPPLSAPSQSPFSSLGLTSQL
PVPGLGSGGLSGMSSSNLGLQGVGTSDPFSQRKLNLPGINPPAFQQSKLKPSDLSQVSPE
MSQQFSKEIDDEANSYFQRIYNQPPHPTMSVDEVLEMLQSFKDSNNKREREVFNCMLRNL
FEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKAFGSKMYYFGI
AALDRFKNRLKDYPQYCQHLASIAHFSQFPHHLIEVTGAAIDSASPTQYIEYGQQSRDPP
VKMQGSITTPGSIALASSLSHTKPSLPSPAITTMAPPSALANTLVPKATTGTKTTPTNFK
KDAPPSINTTNIDTLLVATDISDRIIEPQESVQDKIFFIFNNLSQSNMAQKTEELKDSVK
DESMPWIAQYLVMKRVSIEPNFHGLYSNFLDTLKNPDFTKIVLNETYRNIKVLLTSDKQA
ANFSDRSLLKNLGHWLGMVTLAKNRPILQIDIDVKSLLLEAYMKGQQELLYVVPFVAKVL
ESCSKSLVFRPPNPWTMAIMNVLAELHQEPDLKLNLKFEIEVLCKTLALDINELKPGNYL
KDKDRMKSVEEQLSAPKKEVKPVDEVLVQPPPVTTVITSGTTTTTTAAGPPQPQFNFYDI
NVYSLTGLAPHVSIAPSIGLFQTHPHLKQCVRPSLERAVQELVHPVVERSIKIAMTTCEQ
IVRKDFALDPEESRMRAAAQHMMRNLTAGMAMITCREPLMVSIANNLKNNFLATLRVSLD
EHIIGPATFPQKDIIDQAANQLAQDNCELACCFIQKMAVEKAGPEMDKRLATEFELRKHA
RQEGRRYCDPVVLTYQAERMPEQIRLRVGGVDPKQLAVYEEFARCIPGFLPNNDITQPTG
FLTKPMQQQWGTDDITAVYDKCIAELEHCLHTLPGTVAMNPHVAAMQSLLEAVLLARNSR
EIVTAVALLQKAVEGLLDATVGGDHEIIVRYRDCHLLVLKAVQDPRAYGPMWTSKQVTRC
LMECRDEYRYNVEAVELLICHHLVNMQQYDIHLAQSMENGLNYMAVAFAMQLVRIHLVEE
RGTPQITEADLFNTIETLMRINAHSRVNAPEGLPQLMEVIRTNHEPMMDRTHAGPTSMMH
SGISQAREYDDPPGLHEKAEYLLREWVNMYHSPAAGRDSTKAFSAFVGQMHQHGILKTDD
LITRFFRLCTEMCVDLCYRALNEQHLNPAANPTLTRAKCFHTLDAFVRLIALLVKHSGDA
SNTVTKINLLNKVLGIVVGVLLQDHEIRRTDFQQLPYHRIFIMLLLELNAPEHVLESINF
QTLTAFCNTFHILRPSKAPGFTFAWLELISHRIFIARMLAHTPQQKQGWPMYAQLLIDLF
KYLSPFLRNVELTKPMQVLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI
LSAFPRNMRLPDPFTPNLKVDMLSEINIPPRILTNFTAVMPSQFKKDLDPYLKTRSPVTF
LSELRGNLQVSNEPGMRYNIPLINALVLYVGTQAIAHINSKGSSPSMGTITHSAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPSFKFWDHEFVHCAPEIQKLFQSVAQCCMGQKQTQQVMEG
TATS
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcattggccctatcgcagatcggctacctggtggacaatttg
accaagaagaattacaagacgagccaacaggagatctctcaccttgtgagcaaccacggc
cccgaggcagacagacatctgcttcgttgcctcttctctcatgtggatttcagcggcgat
ggtaaaagtagcggcaaagatttccatcagacccagtttctgatccaagagtgcattgcg
ttgataaccaagccaaactttgtatcaacgctttgctacgccatcgacaatcccttgcac
tatcagaagagcctccgaccatcccctcatttgcttactcagctcagcaaagtgttgaag
ttgagcaaagttcaagaggtggtggttggtcttgcactgttaaactcttcgaatcaagac
ctccagggatttgcggggcagtttgtgaaacagaagctgccggatttgctgcgatcgtac
gttgatagcgaggttggtgggcagcaggagggtggattccaggacattgccatcgagttg
ctgcatctgctactttctctgctgctctacgggccgcggggaactttttgcgttgctcaa
gagcagctgcaggctttcctgcagacattacgcaaagatttcccgagggaacgttgcccg
gtggtgctatcaccgctgctatatcttgacaaggcagacctgctgatggaccgcctcctg
cctgatacatccggcatggccaaaacctcaatggaaggctccttggcagacctcatgcag
gaggttggatacagctgctgttccagcattgatgaatgccgtaccctcatcgtgcagttt
ggcgtgagggatgtacaggcattgcaggtggctcgggtgttggggatgatggcaagatct
cactccagcttgacagatgggatgccattgcagtctatatgtggtcctggaggaagcatc
tggagtgatgggaaggataagagtgaatcgactcagactcatacttggaatgtggaaatt
ttcattgatgttgtcaaagaccctaacctgcacattaatttcaaggaagtggcttatgag
ttggatcaccctggctttcaaatcaaggatggaaagggactacagatcgttgtgtatggc
atacaaaagggattgggcatggatgtctttccggtggaacttgtttatcgtccctggaaa
aacaccgacgggcagatgtctttcattcagcactcgttgctcaacccagatgtgttttgc
tttgccgattatgtctgtcatactgtggtcactgacatcctcaaagcccctccagaggat
gacaacagagagattgctacctggaaatcactggatctaatggaaacattgctgagactg
gcagaatctgggcactatgagcaggtgaagcagctgttcagcttcccactcaagcactgc
ccagacctgctggtgttggcactgctacagatcaactgcacctggaacacactgcgccat
gatctcatctccttgctgatgcccatcttcttggggaaccaccccaactctgccatcatc
ctacactacgcctggcacgggcaggggcagtctcctaccatccgacagctcatcatgcac
gccatggccgagtggtacatgagaggagagcagtacgatcagacgcgcctctcccgcata
ctcgatgtggcccaagacctaaaagccctctcgatgctgctaaatgccacgccatttgcc
ttcgtcattgatttggctgtgctggcatctcgtcgtgaatacctaaagcttgacaaatgg
ctcacagacaagatccgtgagcatggggagccattcatacaagcttgtgtaagcttcctg
aagcgtcgctgcccttcaatcatgggtggtctgccccctgaaaaagaccaaccgaagagt
gcccaacttccacctgaaaccttggctgctatgttggcctgcttgcaggcctgtgcaggc
aatgtatcgcaagagctttcggagactatattgaccatggtagcaaactgcagtaatgtg
atgaataaggctcggcagcctccacctggcgtaatgcccaaaggccgtgtttcgagcacg
agcacactggactccatctcgcctgtgcaggtcaggacacctgagaggctggatgcacta
tccagtattgcctctctcaacatcagtggagcagcacctgcccacgccggtggtatgcag
gcctttccacccaaccttggacaaaccttcaacgcacctccgtcaccagccaaggccttt
cctccgctctcagcacctagccaatctccattctccagcctggggcttacctcccagctg
cccgtgccaggtcttggaagtggaggcctgagtgggatgagcagctcgaacctgggactg
caaggcgttggcacaagcgatccattcagccagcgcaagctcaacctcccggggataaac
cccccagccttccagcagagtaagctgaagccgtctgacctatcacaggtttctccagag
atgagtcagcagttcagtaaggagattgatgacgaggcaaacagctacttccaacgcatc
tacaaccaacccccccaccccaccatgtctgtggatgaggtgctggaaatgttgcagagt
ttcaaggactcgaacaacaaacgagagcgagaagtgttcaactgcatgctgcgcaatctg
tttgaagagtaccgcttcttcccacaatacccggacaaagagctgcacatcacagcctgc
ctgtttgggggcattattgagaaggggctcgtgacatacatggccctaggccttgcccta
cgctatgtgctggaggccctgcgcaaggcctttggctccaagatgtactattttggcatt
gccgctctggaccgtttcaaaaacagattgaaagattatccccaatactgtcagcacctt
gcatcgattgcacacttcagccagttcccacatcacttgatagaggtgactggagccgcc
atcgattctgcttcccccacacagtacatcgagtacggacaacagtctcgagaccctcct
gtgaagatgcagggctccatcaccacacccggcagcatcgcactggccagtagtctgagc
cacaccaagcccagcttgcccagccctgccatcaccactatggcgccaccctctgccctc
gccaacacactcgtccccaaggcaacaactggaaccaaaacgacacccaccaactttaag
aaagatgccccgccttccattaacacgacaaacattgacactttgctggtggcaacagac
atctcggatcgcatcattgaaccccaagagagcgttcaagacaaaatatttttcattttc
aacaacctctcgcagtccaacatggcacagaagactgaggaactaaaggacagtgtaaaa
gacgagtccatgccttggatagcgcaatacctggtgatgaagagagtgagcattgagcca
aattttcatgggctctactcaaacttcctcgacaccctgaaaaatccggacttcactaaa
atagtgctcaatgaaacgtacaggaacataaaggtgctgctaacatctgacaagcaggct
gcaaatttttcagaccgttcccttctaaagaatctgggtcactggttgggaatggtgacc
ctggctaagaataggcctattctacagatagacatagatgtcaagtctctgctccttgag
gcatacatgaaaggacagcaagagctactctatgttgttccatttgtagccaaagttctg
gagtcctgctctaagagtctggtgtttcgtcctccaaacccctggaccatggcaatcatg
aacgtgcttgccgagttgcatcaggaaccagacctaaagctgaacttgaaatttgagata
gaagttctctgcaagactctggcgcttgacatcaatgagctgaagcctggcaactacctc
aaggacaaagatcgcatgaagagtgtggaggaacagctttctgcacccaaaaaggaggtg
aagccagttgatgaagtattggttcaaccacctcctgtcaccactgtgataacaagtgga
acgaccacaactaccacagcagctggacctccgcaaccccagttcaatttctatgatatc
aacgtgtactcgctcaccggtctggctccgcatgtcagcattgctcccagcatcgggctg
tttcagacacacccacatctgaaacagtgcgtgcggccgtcgctggagcgcgccgtgcag
gagctggtacacccagtcgtcgagcgatccatcaagatcgccatgaccacgtgcgagcag
attgttcgtaaggattttgcgctggacccagaggaaagccgtatgcgcgcagcggcgcag
cacatgatgcgcaacctgacagccggcatggcaatgatcacatgccgagagcccctgatg
gtcagcattgctaataacctgaagaacaacttcctggcgaccctacgggtgagccttgac
gagcacatcatcggaccagctacattcccacagaaggatattattgaccaggcagcgaac
cagcttgctcaggacaactgtgagctggcatgctgcttcatccagaagatggctgttgag
aaagctggccctgaaatggacaaaagacttgctaccgaatttgaattgcgaaagcatgca
cgtcaggagggacggagatattgtgaccctgtggtgctcacttaccaggccgaacgcatg
cccgagcagatccgactgagagtgggtggtgtagaccccaaacagctggctgtatatgaa
gagtttgctcgctgcatcccaggatttctgcccaacaatgacatcacacagcctactgga
ttcctcacgaagcccatgcagcagcaatgggggacagacgacatcacggctgtgtacgac
aagtgcattgcggagctggagcactgcctgcacacgctccctggcactgtcgccatgaac
ccgcatgttgctgccatgcaatccctgctcgaggccgtcctgctggccaggaactctcgc
gaaatcgtgacagccgtcgccctgctgcagaaggcggtggaaggacttctggatgccacg
gtgggtggtgatcatgagatcatcgtgcgttacagggattgccacctgctggtgctgaaa
gctgttcaagatccccgagcctatggccctatgtggaccagcaagcaggtcacaaggtgc
ttgatggagtgtcgcgatgaataccgctacaatgtagaggctgtggaactgctcatttgc
caccacctggtcaacatgcagcagtacgacatccaccttgcgcagtcgatggagaatggg
ctgaactacatggcggtggcgttcgctatgcagctggtgcgtatccaccttgtggaggaa
cggggcaccccgcagattacagaggctgacctcttcaacaccattgagacactgatgaga
atcaacgcccactctcgcgtcaacgctcctgaagggctgccgcagttgatggaggtgatt
cgaaccaaccatgagccaatgatggaccgcacacacgctggccccacgtccatgatgcac
tctggcatctctcaggcgcgcgagtacgacgacccgcctggcctgcacgagaaggccgag
tatctgctgcgcgagtgggtcaacatgtaccactcgcccgccgccggccgcgacagcaca
aaggctttctctgcctttgtcggacagatgcaccagcacggcatcctgaagactgatgat
ttgataacacgcttcttccgactgtgcacggagatgtgcgtggacctgtgctaccgtgca
ctgaacgagcagcaccttaacccagccgcaaaccccaccctgacacgcgccaaatgtttc
cacacgctggatgcctttgtgagactcatcgccctacttgtgaagcactctggcgatgca
tccaacaccgtcacgaagatcaacctcctgaataaggtgctgggaatcgtggttggcgtt
ctcctacaagaccatgagatacgtcggacagattttcagcagctgccataccaccgaata
ttcatcatgctgctgctggagctgaacgcacctgaacatgtgctcgagtccatcaatttc
caaaccctgactgccttctgcaatacgttccacatcctgcgtccatccaaggctccaggt
ttcacgtttgcgtggctggagttgatctctcaccgcatctttattgctcgaatgctggcc
catactccacaacagaagcagggctggccgatgtacgcacaactgctcatcgacctgttc
aagtacctaagtccttttctgcgcaatgtggagctgacaaaacccatgcaggtgctttac
aagggaacattgcgagtgctgcttgtactcctgcacgacttccccgagttcctctgtgac
taccactatgggttctgcgatgtcattccaccaaactgcatccagctgaggaacttgatc
ctcagtgccttcccacgcaacatgcgtctccctgaccccttcactcccaatctgaaggtg
gatatgctgagcgagatcaatataccgccacgcatccttacaaatttcacggctgtgatg
ccgtcacaattcaagaaagatcttgacccttatttgaaaactcgctcaccggtcacgttc
ctctcagagctacggggcaacttgcaggtttctaatgagccaggcatgcggtacaacata
ccgctcatcaacgcattggtgctctacgttggcactcaggccattgcgcacatcaacagc
aaaggcagctcgccgtccatgggcacgatcacccactctgcccacatggacatcttccag
aacttggctgtggaccttgacaccgaaggtcggtacctgttcctgaatgccatagccaac
cagctacgctatcccaacagccatacgcactatttcagctgcaccatgctctacttgttt
gccgaagccaacactgaagcaattcaggagcaaattactcgggtactgctggagcgactg
attgtgaatcgtccgcatccatggggcctgctcatcaccttcatcgagctcatcaagaat
ccctccttcaaattttgggaccacgagtttgtgcactgtgccccagaaattcaaaagctt
tttcaatcagtggcgcagtgctgcatgggccagaagcagactcagcaggtgatggagggg
acagcgacaagctaa
DBGET
integrated database retrieval system
