Lethenteron reissneri (Far Eastern brook lamprey): 133346981
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Entry
133346981 CDS
T09663
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133346981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133346981
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133346981
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
TDP-43_N
RRM_7
RRM_PARP14_3
TDP-43_C
Itf52_C
Motif
Other DBs
NCBI-GeneID:
133346981
NCBI-ProteinID:
XP_061414831
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Position
3:complement(12983642..12993390)
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AA seq
493 aa
AA seq
DB search
MASYVRVAEDEGEEPIEIPAEEDGTVLLSSVAAQFPGACGLRYRAGEGRALRGLRLAEGA
LHPPEPATWGIHVYLVTFPKDNKRKMDESDAWNVAKIKRSVQKTSDLIVLGLPWKCNEQD
LRDYFTEVGDVLMVQVKRDAKSGTSKGFGFVRFSEFESQLKAISQRHLIGGRWCDVKLPN
TKQQQSETGFHSKKIFVGRCPPDLTTEDLRAYFSQFGEVTDVFIPKPFRGFAFVTFTDEQ
VANSLCGEDLIIKGSSIHISSADPKGSNNAMGNANPNFSALGLNPQHQSQSFTVNTAALE
QVARYANFGSSSGSSSGNNTPSNNYGYGYGYGYGNNPFGPFTGSNSTSNAAQSSHGSSSF
NRGGGGGGGGMNAAGSASNSSSLGGAAGDGSMNPLGSFNLSPAVMAAMMQSGWNMMGMFQ
GQGQGQGQGQGHGQAQALEQSQANKSGGYGASGGQGGGGYGGWGGTGGSTGSGAAHGTQS
YASSSYEAKPHGW
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtacgtgcgcgttgcggaggacgagggcgaggagccgatcgagatccccgcc
gaggaggacggcaccgtgctgctgtcgagcgtcgccgcgcagttcccgggcgcttgcggc
cttcgctaccgcgcgggagagggtcgcgccctgcgcggcctgcggctcgcagagggtgcg
ctccacccgccagagcccgcgacctggggcatccacgtgtacctcgtcaccttccccaag
gacaacaaacgcaagatggatgagagcgatgcgtggaacgtggctaagatcaagcgctcc
gtgcagaagacgtccgacctcatcgtgctggggctgccgtggaagtgcaatgagcaggac
ctgagggattactttacagaggttggggacgtgctcatggttcaggttaaacgtgatgcc
aagtctggaacttcgaaggggtttggttttgtccgcttcagtgagttcgagagtcagttg
aaggccatctcgcagcggcacttgattggtggccgctggtgcgatgtcaagctgcccaat
accaagcagcagcagtcggaaacgggtttccacagcaaaaagatctttgtgggccgctgc
ccgcctgaccttaccacggaggacctgcgggcatacttcagccagtttggagaagtcacc
gacgtcttcatccccaaacctttcaggggatttgccttcgtgactttcacagatgagcag
gtggcaaacagcctgtgtggagaagacctcatcatcaaggggtccagcattcacatctcc
agcgccgatcccaagggcagcaacaacgccatggggaacgccaatccaaacttctcggcg
ctgggcctcaatccgcagcaccagtcgcagtcgttcacggtcaacactgccgcccttgag
caagtggcgcgctacgcaaacttcggctcttccagcggcagctcgagtggcaataacaca
cccagcaacaactacggttatggctacggctacggatatgggaataacccctttggtccg
ttcacggggtcaaattcgacgtcgaatgccgcccagtccagccacggatcttcgtccttt
aatcgcggtggaggcggcggcgggggcgggatgaacgccgcggggagcgcgtcaaattcc
tccagccttggcggcgcagcaggagacgggagcatgaatccgctgggctcgttcaatctc
agccccgcggtgatggctgccatgatgcagagtggttggaatatgatggggatgtttcag
gggcaggggcagggtcagggtcaggggcaaggccatggccaagcgcaggctttggagcag
tcgcaggcaaataagtctgggggatatggggcgagtggggggcagggaggaggtggctat
ggggggtggggtggaactggaggttctacggggagcggagcagcgcacggcacccagtct
tatgcctcctccagctacgaggccaaaccacatggctggtaa
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