Lethenteron reissneri (Far Eastern brook lamprey): 133349507
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Entry
133349507 CDS
T09663
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133349507 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133349507 (NDC1)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133349507 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
133349507
NCBI-ProteinID:
XP_061419019
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All DBs
Position
4:5268878..5297140
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AA seq
671 aa
AA seq
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MGTTRHWFLQRELRWRVAAAVAWAVLMLPVFTAAYLALARLDPLHPLLWVADTLSELASS
HVLFTLTLLSLMLLLVSAFDSRNYTAVALVPCTPLGTLAGAVSPHRLLHCAAHAVAGLLA
AWCAVLTAGGAYRSLSIKCGTQRSPVGECLSERHLFVLLFGGFVGATYSFLYFHSHMYYV
PFPAIQMYKYRRFRALLPRILTHSAAQSLRLLRYYCLLYFLLGKWPRGWVMAAFDLHLDS
SVSRLDSVSGLLDVPLLYETWLAGAFLLLTWYLSWALLRIFSTEPHVFFVESSFPEEAEM
CLPAVLASNPPSIVKHLALQDLSILAQYSPGRRQQIFSLSQPGGRPHTWTMVSSTCLSLL
TELAQRLVARQDLPTNQLSKGGLPGPDAANQACLPGCTPLHMPHAARMRSLVQPLPPTPS
VAGRLGPAPSTPADLRLPPSPPFTPDLGGAGQVGAVMELPLRPQLDLGSPWHGAVQSPHL
MRRGPRLWSSTSPVSSLLATPPLPPQSPPQQNTAAPDWLGQKWDQVKNYIIKVWPVSYFV
HKLPESSSQALFADCQAHIWALEALSHLVAASITEDRFGVVQTRLSEILNAMLALQDAVD
RHFKLPQAPNRPARQAHSLVDSSHKNLRFALRAALKTAVYRVASTFGEHLNSVQVAPEYR
RRLQMFLDFKE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccacgaggcactggtttctgcagagggagctgcgctggcgtgtggcggccgcg
gtggcgtgggccgtgctgatgctgcccgtgttcacggccgcctacctggccctcgcccgc
ctcgaccccctccaccccctgctctgggtcgccgacaccctgagcgagctcgcgagctcc
cacgtgctattcaccttgacgctgctgtcgctaatgctgctgctggtgtcggcgttcgac
tccaggaattacacggcggtggcgctggtgccgtgcacgccgctgggcacgctcgccggc
gccgtgagtcctcaccgcttgctgcactgcgccgcacacgccgtggccggcctgctggcg
gcgtggtgcgccgtcctcaccgctggtggcgcctaccggtcgctgagcatcaagtgcggc
acgcagcgcagccctgttggcgagtgcctgagcgagcgccacctcttcgtgctgctcttc
gggggcttcgtgggcgccacctacagcttcctctacttccacagccacatgtactacgtc
ccgttccccgccatacagatgtacaagtaccggcgattccgagcactgctgccacgcatt
ctaacccacagcgccgcccagtccctgcggctgctgcgctactactgccttctctacttc
ctgcttggcaagtggccgcgagggtgggtcatggcagcatttgacctccacctggacagt
tcggtgtcgaggctggactctgtgagcggcttgctggacgtgcccctgctgtacgagacg
tggctggccggggccttcctgctgctcacctggtacctgtcctgggccttgctgcggatc
ttctccaccgagccccacgtcttctttgtggaaagcagcttcccagaggaggcggagatg
tgcctgcctgccgtccttgcctccaaccccccgtccattgtgaagcatctggctctgcag
gacttgtccattctggcccaatattctcccggtcgacgccagcagatattcagtctaagc
cagcccggtggtcgcccacacacgtggacgatggtgagctccacgtgcctctcgctgctc
actgagctcgcccaacgtctcgtcgcccgccaggatctgcccaccaaccagctttccaag
ggcggcctcccgggcccagatgctgccaaccaagcctgccttcccggctgcacaccgctg
cacatgccgcatgccgccaggatgcgctccctggtgcagccgctgccgccgaccccgagc
gtcgcggggaggctcggcccagccccctccactccagccgacctgcgcctcccgccaagc
ccgcccttcacgccggacttgggtggcgccggtcaagtaggagcggtgatggagttgccg
ctcaggccgcagctggatctgggctcgccctggcacggcgcggtgcagagtccacacctc
atgcgccgcggtccccggctgtggtcgtccacgtcgcccgtgtcgtctctgttggcgacg
ccgccgctgccgcctcagtcgccgccccagcagaacacggcagctcctgattggctggga
cagaagtgggatcaggtcaagaactacatcatcaaagtttggccagtgtcatatttcgtg
cacaagctgccggagtcgtcgagccaagcgctgtttgccgactgccaggcgcacatctgg
gcactggaggctctctcacatctggtggctgcatcgatcaccgaggacaggtttggggtg
gtgcagacgcgactgtcggagatcctgaatgcaatgctggccctgcaagatgccgttgac
cgtcatttcaagctgccgcaagcgccgaaccgcccggcacgacaggcgcacagcctggtg
gactcttcacacaagaacctgcgcttcgctctgcgcgccgctctgaagacggcggtctac
cgcgtcgcatccaccttcggcgagcacctcaactccgtgcaggtggctcccgagtaccgg
cgaaggctccagatgtttctggacttcaaggagtaa
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