Lethenteron reissneri (Far Eastern brook lamprey): 133354071
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Entry
133354071 CDS
T09663
Symbol
SKIC3
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133354071 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133354071 (SKIC3)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133354071 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_CcmH_CycH
TPR_2
TPR_1
TPR_16
TPR_14
TPR_8
TPR_17
TPR_12
TPR_11
TPR_Slam
TPR_9
DUF5588
ANAPC3
TPR_4
Motif
Other DBs
NCBI-GeneID:
133354071
NCBI-ProteinID:
XP_061426612
LinkDB
All DBs
Position
46:11636361..11672036
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AA seq
1600 aa
AA seq
DB search
MASKEVKVALKAAREAINGKDFKEVLKHCKAVLQADKENYTAWVFIGVAAGELDQPEKAE
DSFRRAAHIDPAQPLAWQGLASLCEKLEQPRFKQALPDVYEKLLGIFESSDRVKWCDICK
KLAETQEAQQRVDEAVRAWARLYEWKRRQDGADGVELRVLWGRATSALARADAAGPAADG
GLECAYERLLELGSEDVAGLEEEKLLVNYITFLSKRAGAEERLRATCAAALARDGAGRAL
LERVASVYVGAGDASEAAVRCYERLRAVEPRSAAARVGLALGELRERRLGEAREALRKVS
AEEPGFLPAWRHLSDVLLRTHDRHGAAAATEHALQLLTKQEAGLVASGAQRRALLRIRAE
ALTASRPGEAAAIFTELLVEAAADVDLRVGLADALLKGKRLPEARQVVEELQASNADSVA
VLALHGRLALEEGDLALAESRSGAALAMEPENGRLQLQLGLVLWEGGGEGRTDKSKACAH
FLKAARCDPFLGDAFLHLGLFYRDVAGDLGRARGCFRRALELSPAEPQAGAGAVDCSVTL
GDEDAALQILTAVTEQAVAGSAQWAWLRLGLYHLRRRDHPRAITCLQSALRAEPHDAVSW
ECLGEAYLARGAYTAAGKAFARSAELAPGPQSTYSRYQTAAIRQSLGSHAEAARLYQQLL
CDDPTHVPALKGLAESHVALARASLADHLDGRAVSHAQEALAALASAVVLRPDFSCLWKL
VGDACTALHHLHSSSVSLGVPAILLGPGDGGLPAGTTATVGKRAALELGARCYGRALRLL
PGCSGPWHDLGVNYYRQAQHLRQEAARSPSTELAQETAGAAMEVLDKALQSLKKAVMLDS
SNHRHWSALGVVAASEGVRNEALAQHAFIKSIQAEQNNVVAWTHLGALYLGKGSMELAHE
AFKVAQSLEPCYVASWIGQALIAETIGSDEAMDLFRHTTELGMHVEGALGYVHWVCTTLH
QQQPGRGGAAAAPPVPYSVERMGAVPSAHLAACKYIERHPEDAVALTMLGLLSEHLDLHR
QAVDAYHRALEVIRSSGEQEKLNWALRNYGRALHAAGRYGEAAATFRAASPAPAHFDDAA
GLALALFKLGKLEESIAAYERALAAAASDADRSLVLTALAAVEFRRGRHDAAKTLLFRCS
LSKEPCEEGLLALCALGLALGDPTLSAAALSELAKPRVSAGRGGVARGARGGRGAARASR
VSLLTVALLALRGDGVAVQRQASKAVHRNPGDASLWEFLARVVPQFTPNKAKGGATAAQV
ATILDFSVAKRAPRYLAVNLLAGGSGLRGLKASQRAVHLYPDDAASWACVLAASHADAVR
RWADATAPRPRPGLSDAVLDIVATRVNGGGVEAGLHDLGGWVHCQAASAELWEGRNKAAL
RACFKGLDSLGDDDGARSTLSFVAALVRFCEALTSGGRSWGGALEDLRSATLDAATPYAW
QALAGVYLRAGRALAAEVCYRHGLQVAARVGDFSGKVSSLLRLAHLAVVIVAAGVKEERW
APLAQEALATLAKAAPGEAVTRLLQGALPFCMNPGARPTRKALERASRGAGTEASIARCL
LVRHLLLKSDDHLLQILLEDVKTCGDTRTLALHARLSAGS
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaggaggtgaaggtggccctgaaggcggcgcgtgaggccatcaatggcaag
gacttcaaggaggtgctcaagcactgcaaggcggtgttgcaggccgacaaggagaactac
acggcgtgggtgttcatcggcgtggcggccggggagctggaccagcctgagaaggccgag
gactcattccgcagggccgcgcacatcgacccagcgcagccactcgcgtggcagggactg
gcgagtctgtgtgagaagttggagcagccgcgcttcaagcaggccctcccggatgtctac
gagaagctgctgggcatcttcgagagcagcgaccgcgtgaaatggtgcgacatctgcaag
aagctggcggagacgcaggaggctcagcagcgagtggacgaggccgtgcgagcttgggca
cgtctctacgagtggaagcgccggcaagacggggccgacggggtggagctgcgcgtgctg
tggggccgcgcgacgtccgcgttggcacgcgccgacgccgccggcccggccgccgacggc
gggctggagtgtgcatacgagcggctgttggagttgggttcggaggacgttgctgggctg
gaagaggagaagctcctggtgaactacatcactttcctgtccaagcgtgccggcgccgag
gagcgtctacgtgccacctgcgccgcggccctggcgagggacggcgccggccgggccctg
ctggagcgcgtcgcctccgtctacgtcggcgccggcgacgcgagcgaagcggccgtgcgc
tgctacgagcgcctgcgagccgtggagccgcggagcgccgccgcgcgggtcggcctggcg
ctcggggagctgcgcgagcgccgactcggcgaggcccgggaggcgctgcgcaaagtaagc
gccgaggagccgggcttcctgccggcgtggcgccacctgtcggacgtgctcctgcgcacc
cacgaccgccacggcgccgccgccgccacggagcacgcgctgcagctgctgacaaagcag
gaggcgggtttggtcgcgagcggagcgcagcggagggcgctgctccggatccgggcggag
gcgctgacggcgagccgcccgggggaggcggcggccatcttcacggagcttctggtcgag
gctgctgcggacgtggatctcagggtggggctggcggacgccctcctgaagggcaagcgg
ctcccggaggcgcggcaggttgtcgaggagctgcaggcgtcgaacgcggactccgtcgcc
gtgctggcgctgcacggccgcctcgccctggaggagggcgacctggcgctcgccgagagc
cgctcgggggcggcgctcgcgatggagccggagaacgggcggctgcagctgcagctcggg
ctggtgctgtgggagggcggcggggagggccgcacagacaagagcaaggcgtgcgcccac
ttcctcaaggcggcgcggtgcgacccgttcctgggcgacgcgttcctgcacctgggcctc
ttctaccgcgacgtggcaggggacctgggccgcgcccgcggctgcttccgccgtgcgctc
gagctgagccccgcggagccgcaggccggggccggcgccgtggactgcagcgtcacgctg
ggtgacgaggacgcggctctgcagatcctcacggccgtcacggagcaagcggtggccggc
tcggcgcagtgggcctggctgcggctcggactctaccacctgaggcggcgcgaccacccc
cgcgccatcacctgcctgcagtcggcgctgcgggcggagccgcacgacgccgtcagctgg
gagtgtctgggcgaggcctacctggcacgcggcgcctacaccgccgccggcaaggccttc
gcacgttccgccgagctggcgccgggcccgcagtccacctacagccgctaccagacggcc
gccatcagacagtccctgggctcgcacgccgaggccgcccggctctaccagcagctgctg
tgcgacgaccccacgcacgtgccggccctgaagggtctggccgagagccacgtggcgttg
gcacgcgcctcgctcgccgatcacctggacggccgcgcggtgtcgcacgctcaggaggcc
ctcgccgccctcgccagcgccgtggtgctgcgccccgacttctcttgcctgtggaagctc
gtgggagacgcgtgcacggcgctgcaccacctgcactcctcgagcgtgtccctgggagtc
cccgcgatcctcctgggccccggcgacgggggcctcccggccggcacgaccgccacggtc
ggcaagcgggcggcgctggagctgggagccaggtgctacggccgcgccctgcgcctgctg
cccggctgctcgggcccttggcacgacctgggcgtcaactactaccgccaggcccagcac
ctccgccaggaggcggcgcggagccccagcacagagctcgcccaggagaccgccggtgcg
gccatggaggtgctcgacaaggccttgcagagcctgaagaaggcggtgatgctggacagc
tccaatcaccggcactggagcgcgctgggcgtggtggcggccagcgaaggtgtgaggaac
gaggccctggcccagcacgccttcatcaagtccatccaggccgagcagaacaacgtggtg
gcgtggactcacctgggtgccctgtacctgggcaaaggcagcatggagctggcccacgag
gcgttcaaggtggcacagtctttggagccgtgctacgtcgcgtcctggatcggccaggcc
ctcatcgccgagacgatcggcagcgacgaggccatggacctcttcaggcacacgacggag
ctgggcatgcacgtggagggagcgctgggctacgtgcactgggtgtgcaccacgctgcac
cagcagcagcccggccgcggcggcgctgccgccgccccccccgtgccgtacagcgtggag
cgcatgggagcggtgcccagcgcacacctggctgcctgcaagtacatcgagaggcacccg
gaggatgccgtggcgctcaccatgctggggctgctcagcgagcacctggacctgcacagg
caggcggtggacgcctaccacagggctctggaggtcattaggtcatcgggtgagcaggag
aagctgaactgggctctgagaaactacggccgcgccctgcacgccgcgggacgctacggc
gaggcggccgccacgttcagggcggcgtccccggcgccggcgcacttcgacgacgccgcg
gggctcgcactggcgctcttcaagctgggcaagctggaggagagcatcgccgcgtacgag
cgagctctggccgccgcggcttccgacgccgaccgctcgctggtgctcacggcgctcgcg
gccgtggagttccggcgcggccgccacgacgccgccaagacgctgctcttccgctgctcc
ctgtccaaggagccgtgcgaggagggcctgctggcgctctgcgccctgggcctggcgctg
ggcgaccccacgctgtcggcggccgccctctcggagctcgccaagccgcgggtgtcggcg
ggtcgcggcggggtcgcgcggggggcacgcggggggcggggggcggcgcgcgcctcccgc
gtgtcgctgctcacagtcgccctgctggcgctgcggggcgacggcgtcgccgtgcagcgc
caggcctccaaggccgtgcacaggaacccgggagacgcgtcgctctgggagttcctggct
cgggtggtgccccagttcaccccaaacaaagccaagggaggagccacggccgcccaggtg
gcaaccattttggacttctccgtcgccaagcgggcgccccgctacctcgccgtcaatcta
ctggcggggggctccggcctgcgggggctcaaggcctcgcagcgggccgtgcacctctac
ccagacgacgcggcgagctgggcctgcgtcctcgcggccagccacgccgacgcggtgcgg
cgctgggcggacgcgacggccccacggccgcgcccgggcctcagtgacgccgtgctggac
atcgtcgccacgcgagtgaacggcggtggcgtggaggccgggctgcatgacctcggcggc
tgggttcactgccaggcggcctcagccgaactctgggagggccgaaacaaggccgcactc
agagcctgcttcaagggcctcgactctctgggcgacgacgacggggcgcgatcgacgctg
agcttcgtggccgccctcgtccgcttttgcgaggcgctcacctcgggcggtcggagttgg
gggggcgcgctggaggacctccgctccgccacgctggacgccgccaccccctacgcctgg
caggcgctggccggcgtgtacctgcgcgccgggagggcgctcgccgccgaggtttgctac
cggcacgggctgcaggtggcggcgcgcgtcggcgacttctcggggaaggtctcctccctg
ctgcgcctcgctcacctcgccgtcgtcatcgtcgccgccggggtgaaggaggagcgctgg
gcgccgctggcgcaggaggcactggcgacgttggcgaaggcggcaccgggggaggcggtg
acgcggctcctgcagggggcgctgcccttctgcatgaaccccggggcaaggccaacgcgc
aaggccctggagcgagcgtcgcgcggcgccggcaccgaggcctccatcgcgcgctgcctc
ctcgtgcgccatctgctgctcaagagcgatgaccacctcctgcagatcttgctggaagac
gtgaagacgtgcggggacacgaggacgctggcgctgcacgcgcgtctctccgccggaagc
tag
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