Lacticaseibacillus rhamnosus Lc 705: LC705_01121
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Entry
LC705_01121 CDS
T00990
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lrl
Lacticaseibacillus rhamnosus Lc 705
Pathway
lrl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC705_01121 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrl03019
]
LC705_01121 (recQ)
03400 DNA repair and recombination proteins [BR:
lrl03400
]
LC705_01121 (recQ)
Enzymes [BR:
lrl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC705_01121 (recQ)
Messenger RNA biogenesis [BR:
lrl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC705_01121 (recQ)
DNA repair and recombination proteins [BR:
lrl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LC705_01121 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
CAR89960
LinkDB
All DBs
Position
1104174..1105949
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AA seq
591 aa
AA seq
DB search
MPQPATILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGLTL
VVSPLIALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERFDAD
WFLQQLGDMNISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATPRV
AQDICQRLMIPDDGVINTGFERDNLSFKVVRDQDEDRYLLDYLKLNVDQSGIIYASTRKE
VDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSNVRFV
IHAQIPKDLESYYQEAGRAGRDGLPSEAILLFRPQDLQVQRFFIEQSEGDEAHQRRQYDK
LKIMERYANTDQCLQQFILNYFGQTGTAPCGRCSNCLDDRESVDVTIDAQKVLSCVVRLH
ERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMKNRRQRDITTFIDFLTAGGFLETRGG
QYPTLGLTAKGAEVLRGQTTVFQKTAQKVTQTLEVDDTVFQELRSTRRQLAEQQHLPPYM
IFSDKTLKAIGNAMPKTLDELLAVKGVGQAKLDKYGQIFLDVLQAIQTEKA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
ttgccgcagccagcgacgattttaaaagaaaaatttgggtacgatcactttcgagccggt
caaaagcaggcaattgagcgaattatgaccggtaagagcacgctggtcgtgatgcctacc
ggtggcggcaagtctttgtgttatcaggtgccggcgatgattctgccgggcttgacgctg
gtcgtttcgcctttaatcgctttaatgaaagatcaagttgatgcgttaaacgacaatgcc
attccggcggcgtttattaatagcacgttggattatcgtgaaattactgcacgtctggaa
caggcgcgcagtgggaacattaagttgttatatgtggcgccggaacggtttgatgcggat
tggttccttcagcagctcggtgacatgaatatctcgctttttgctattgatgaagcccac
tgtatttcacagtggggacatgattttcggccgagttatctcaacttggctaacgttgcg
gctcaattaccctcgcagccgccggtcattgccttaactgcgacggcgacaccgcgggtt
gctcaagatatttgccaacgcttgatgatcccggacgatggggtcatcaacacagggttt
gaacgtgacaacctgagtttcaaagtggtgcgcgatcaggatgaggatcggtacttgttg
gattatctaaaactcaatgttgatcaatccggcattatttatgcaagtacgcgcaaagaa
gtcgatcggatttatgcgtttttgcagcataagcagttgccggtagccaaatatcacgcc
ggcatgactgaaaagcaacgtgctgctaatcaggaagactttttgtttgatcgtaagccg
attatggtcgctaccaacgcgtttgggatggggattgataaaagtaacgttcgcttcgtg
attcatgcccagattcccaaagatttggaatcgtattatcaagaagcaggtcgcgccggt
cgtgatgggttgcctagtgaggcgatcttgttatttagaccgcaagacttgcaggtgcaa
cggttttttattgaacagtctgaaggtgacgaggcgcatcaacggcggcagtatgacaaa
ctgaaaatcatggagcgctatgccaataccgatcagtgtctgcagcagtttattttgaac
tattttggtcagactggcactgccccgtgtggacgttgttcgaactgcctagatgatcgt
gaatccgttgatgtgaccattgacgcgcaaaaggttctgtcatgtgttgttcgattgcac
gagcgattcgggaaaggcgttgttgcccaggtcttggctggtgcgcacaatcaacgcgtc
ttgtcgtttcatctcgatcagttgtcaacatatgggctgatgaaaaatcgccggcagcgg
gatattacgaccttcattgatttcctgacggccggtggctttctggaaacgcgtggtggt
cagtatccaacgcttggcttaaccgcaaaaggtgctgaagtgttacgcggacagacaact
gttttccaaaagaccgcgcaaaaagttactcagacgcttgaagttgatgacacagtcttc
caagaactgcgcagtactcgccggcaactggcggagcagcagcatttaccgccgtatatg
attttttccgataagacgttaaaagcgattggcaatgcgatgccgaaaacgttggatgag
ttgctggcggttaaaggagttggccaggcgaaacttgataagtatgggcagattttcttg
gatgtgttgcaggcgattcaaacggagaaagcgtga
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