Lacticaseibacillus rhamnosus LOCK900: LOCK900_2529
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Entry
LOCK900_2529 CDS
T02730
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lro
Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK900_2529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lro03019
]
LOCK900_2529
03009 Ribosome biogenesis [BR:
lro03009
]
LOCK900_2529
Enzymes [BR:
lro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOCK900_2529
Messenger RNA biogenesis [BR:
lro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOCK900_2529
Ribosome biogenesis [BR:
lro03009
]
Prokaryotic type
rRNA helicases
LOCK900_2529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGP72307
LinkDB
All DBs
Position
complement(2507087..2508595)
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AA seq
502 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QHIDKADRSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHP
QIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLF
SATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLATIKEQVEANDTEKYEAMAETLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPRRGRNNHGHGNNRGGYKGGYKGKRRDGGYQGNRDGKRSYD
KKRNFGDKRKNVKRNFKIRTGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcccagtcaggt
tttgaggaagcgacgccgattcaagcggagacgatcccactggttctggaaggcaaagat
gtgatcggtcaagctcagaccggtaccgggaaaacggcagcgtttggcttgccaattctg
caacacatcgataaagccgaccggagtatccaagcattggtcatttccccaactcgggaa
ttggcgattcagacccaagaagagctttaccgtttaggccgcgacaagaagatcaaggtt
caggctgtctatggcggcgctgatattcgccgccagattcgtcagcttgctgaccatccg
caaattgtggttgggacacctggtcggattcttgatcatattggtcgtcataccttaaag
ctggaacaccttgataccttggtgttagatgaagccgatgaaatgctcgatatgggcttc
attgacgatattgaaaagattgttgaacaaatgccgaccgagcgtcaaacattactgttc
tccgcgacgatgccggcagcgatcatgcgcttaaccaacaagttcatgaaagaacctgtg
attgtcaagattaaggctaaggaactgacagcagataccgttgagcaatattatgttcgg
gccaaggactatgaaaagttcgatgtcatgacacgactgtttgacgttcaggatccggac
ttggcgctgatttttggacggaccaagcgtcgtgttgacgaactgacacggggattaaag
gcacgcggctatcgggctgaaggtattcacggcgatttaacccagcaaaagcgaatgagc
gttttgcggcagttcaagagcggccaattggattttctggttgcaaccgatgtcgctgct
cgtgggttggacatttccggtgtcacccatgtttacaactatgatatcccgcaagatccg
gattcctatgttcaccgtatcggtcggacaggacgcgccggacataaaggggtatccgtt
acctttgtcacgccaaatgaaattgaatatctgcacaccattgaggatctcaccaagaag
cggatgctgccgatgaaaccgccgacagctgaagaagcattaatgggccagatctccagc
ggcttggcaaccatcaaggaacaagttgaagctaacgataccgaaaagtatgaagcaatg
gctgaaaccttgttggaaaactacaccccgttgcagctggtttcggcgtatctcaaggca
gttagccctgacgatgcgagtgccgttccggttaaaattacaccagaacgtccattacca
cgccgcggccgcaacaatcacggccatggtaacaatcgtggcggttataaaggcggctac
aaaggcaagcgacgcgatggcggttatcaaggtaatcgcgatggcaagcgcagttacgac
aagaagcgcaactttggcgacaaacgtaaaaacgttaagcgtaatttcaaaatccgtacg
ggtgaataa
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