Labeo rohita (rohu): 127152628
Help
Entry
127152628 CDS
T09007
Symbol
si:dkeyp-50d11.2
Name
(RefSeq) calpain-1 catalytic subunit isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04141
Protein processing in endoplasmic reticulum
lroh04210
Apoptosis
lroh04217
Necroptosis
lroh04218
Cellular senescence
lroh04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127152628 (si:dkeyp-50d11.2)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
127152628 (si:dkeyp-50d11.2)
04217 Necroptosis
127152628 (si:dkeyp-50d11.2)
04218 Cellular senescence
127152628 (si:dkeyp-50d11.2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127152628 (si:dkeyp-50d11.2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lroh01002
]
127152628 (si:dkeyp-50d11.2)
Enzymes [BR:
lroh01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
127152628 (si:dkeyp-50d11.2)
Peptidases and inhibitors [BR:
lroh01002
]
Cysteine peptidases
Family C2: calpain family
127152628 (si:dkeyp-50d11.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
CAPN13-like_C_EFh
EF-hand_7
EF-hand_5
Motif
Other DBs
NCBI-GeneID:
127152628
NCBI-ProteinID:
XP_050949363
LinkDB
All DBs
Position
21:12590334..12606079
Genome browser
AA seq
715 aa
AA seq
DB search
MEPICAMGVAARLRSEWDRNAGLGQNNMALKFLGQDFETLRTRCLQSRRLFEDETFPAQQ
SSLGFKELGPGSAKTKGVRWMRPTEFCTDPHFIVDGATRTDICQGALGDCWLLAAIACLT
LNEPLLHRVVPHGQSFHQQYAGIFHFQFWQFGDWVDVVIDDRLPVRDGKLLFVHSAEGAE
FWSALVEKAYAKLNGCYEALSGGCTSEGFEDFTGGVTEMYELKKAPTNLFSIIRRAVERG
SLMGCSIDITSFFDMEAITFKKLVKGHAYSVTGVEEVKYRGKLTELLRIRNPWGEVEWTG
PWSDESREWREIDQSVRSRLHNCQEDGEFWMSFSDFMREFSRLEICNLTPDALQSSEVKK
WNTAMYPGEWRRGSTAGGCRNYPATFWINPQFKVVLKEPDTESPEDCTFLVALMQKNRRK
LRREGKDMETIGFAIYEVPDEYLGRVGVHLKRDFFLSHTSSARSELFINLREVSSRFCLP
AGEYIIVPSTFEPQKEGDFVLRVFSEKAADSHELDDEISADVPEEPAIQESDIDEGFKAL
FAKLAGPEMEINVLKLQMILNRVVGKHKDIKTDGFDKEACRGMINLMDSTGTAKLGLTDF
HVLWEKIKRYLEVFRKFDLDKSGTMSSYEMRLALESAGFKLTNNLFQLIILRYAKADLNV
DFDSFVSCLIRLETMFKTFKSMDTDEDGLVTFSFTQVGLNWSLKEKSTSKTKIHI
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggagccaatttgtgccatgggggtcgctgcccgtttgaggagcgaatgggatcgaaat
gcgggattgggtcagaacaacatggcccttaagttcttaggccaagattttgaaaccttg
cgcactcgctgccttcaaagcagacgtctgtttgaggatgaaacattcccagctcagcag
tcttctttaggattcaaggaattgggccccggttctgccaaaaccaaaggtgttcgctgg
atgaggcccacggagttctgcactgacccacactttatcgtagatggggccacacgcaca
gacatctgccaaggagctctaggggattgttggctgctggcagccattgcgtgccttacc
ctcaatgaacccttgctgcatcgggttgtgcctcatggccagagcttccatcagcaatat
gctggaatctttcacttccagttttggcagtttggggactgggtggatgtggtgattgat
gaccgtctgcctgtcagagacgggaagctgcttttcgttcactcagcggagggagcagag
ttttggagcgccctggtggagaaggcgtatgccaagttgaatggctgctatgaggctctg
tcaggaggctgcacgtctgaggggtttgaggacttcaccggcggagtgacagagatgtat
gagctgaaaaaagctccaacgaacctcttcagcatcatcagaagagctgtggagagaggc
tctctcatgggctgctccatagacattacaagtttctttgacatggaggcgatcacattt
aaaaaactagtgaaaggccacgcatactccgtcactggagtggaggaggtgaagtacaga
ggaaagctcacagagctgttgcgcatcagaaacccttggggagaggtggagtggacggga
ccctggagtgacgagtcaagggaatggcgtgaaattgaccagtctgtaaggtcccgtctg
cacaactgccaagaggatggagaattctggatgtcattcagtgacttcatgcgagagttc
agcagactggagatctgtaacctgacgccggatgcgctacaaagcagcgaggtgaagaag
tggaacacagccatgtatcctggtgaatggagaagaggaagcactgctggcggctgcagg
aattatccagcaacattttggatcaatccccagtttaaagtagttttgaaggagccagat
actgagagtccagaagactgcacttttctagtggcactgatgcagaagaatcgcaggaag
ttacgtagagagggcaaagacatggaaacgattggatttgccatttatgaggtccctgac
gagtatctgggccgggtgggtgtgcatctgaagcgggattttttcctatcccacacgtcc
agtgctcgttccgagctcttcatcaaccttcgagaggtgagctctcgtttctgtctgcca
gcgggggaatatatcatcgtcccctccacctttgagccccagaaagaaggagactttgtg
ctgagggtcttctcagaaaaggctgccgactctcatgagctagatgatgaaatttcagca
gatgtaccagaggagcctgcgatccaggagagtgacattgacgagggcttcaaggcgctt
tttgcaaagctggcagggccggaaatggagatcaatgtgttgaaactccagatgattctg
aaccgggttgttggcaaacataaagatataaagacagatggatttgacaaagaagcctgt
cgaggcatgataaatcttatggattcaactggcactgcaaagctgggattgacagacttc
catgtgctctgggagaagatcaaacgatatcttgaagtgtttaggaagtttgacttggac
aagtccggcacaatgagctcttatgaaatgcgtctggcactagaatcagcaggtttcaag
ttgaccaacaacttgttccagctgataatcctgcgctacgcaaaagcagacctcaacgtg
gattttgacagctttgtgtcttgtctgatccgcctggagactatgttcaaaacatttaaa
tcaatggacactgatgaagatggattggtaaccttcagcttcacccaggttggtcttaac
tggtccttaaaggagaagtccacttccaaaacaaagattcacatataa
DBGET
integrated database retrieval system
