Labeo rohita (rohu): 127156469
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Entry
127156469 CDS
T09007
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127156469 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127156469 (cnot1)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127156469 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127156469 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
127156469
NCBI-ProteinID:
XP_050955293
LinkDB
All DBs
Position
25:complement(15101060..15122158)
Genome browser
AA seq
2378 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQTISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGVSEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQS
CAGSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAM
GSLSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGITVPGPLST
SLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEANS
YFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPDKEL
HITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQ
YCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTPKAP
QPGQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTERIVE
PPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYS
NFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPI
LYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLAELH
QEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPEEML
PIVTTDSVPFTAAPSAPATTTTCTATGPPTPQFSYHDINVYALAGLAPHININVNIPLLQ
AHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAHHM
MRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELAC
CFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKVGGV
DPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLEQHL
HAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADTDLLLS
YRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYD
LHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTNAHSRANAP
EGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLY
HSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHPTTS
PAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVGMLTMVLGIVVGVLIQDH
DVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAW
LELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRV
LLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEI
NIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINAL
VLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPN
SHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFW
SHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacacattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtgggaaagatttccaccagacacagtttctgattcaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttcttaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcatac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcagaagggctcgagcggagtcgggcaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaacaagaccatgatggagagttctcttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgatgagtgcaggaacataatcctgcagtat
ggggtccgagaggtgacagccagtcaggtggccagagtgctgggcatgatggcccgcact
cactctgggctgtccgatggcatcggcctacagaccatctcaaatccggtgggcggtggg
atctggagcgatgggaaggacaagagtgacggctctcaggcccacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagctagaccaccctggctttcttatccgggacagtaaggggcttcagatagtggtctat
gggatccagaggggtctgggaatggaggtgttcccagtggatctcatctacagaccttgg
aagcatgcagaaggacagctgtcattcatccagcactcgctgatgagtcctgaagttttc
tgctttgctgactatccctgtcatacggttgccattgacatcctgaaggccccacctgag
gatgacaacagagaaatagccacatggaagagcttggaccttgtggagagcctcttgcgc
ctttctgaagttgggcattacgaacaggtgaagcagctcttcagcttccctatcaagcac
tgcccagacatgctagtgttggcgctgctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctcatcatg
cactctatggccgagtggtacatgagaggagagcagtacgaccaggccaagctatctcgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcacggggtaagtgagccgtttatccaggcgtgtgtc
acgttcctgaagagacgctgtccctccatcatgggtggtttggcccctgagaaagaccag
ccaaaaagtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtct
tgtgctgggagtgtgtctcaagagctatcagagacaatcttgaccatggtggccaactgt
agcaatgtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagct
cccagcaccagcagcttagatgctatctcacctgtgcagatggaccctctttctgcgatg
ggctctttgagtctaggtgtctcgtccacctctcacaccccgagcatgcaaggattcccc
agcctgcagggctctgccttcagcaacccccagtccccagccaaagccttctcaaacctg
cccaacccaaaccccagcacagctttcccaggaatcacggtcccaggtcctctgagcaca
agcttgactgggattggctcaggtttgggcatgcctgccgtcagcagtgatccctttggc
accaggaagatgagcacaccggggttgaacccgcccaccttccagcagactgacctctct
caggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgaggcaaacagc
tacttccagcgcatctacaaccatccgccgcaccccacaatgtctgtggatgaggtgctg
gaaatgctgcagagatttaaggactcgaacatcaagcgggaacgggaagtttttaactgc
atgctgcggaatctgttcgaggagtaccgattctttcctcagtatccggacaaagagctg
cacatcactgcttgcctctttggggggatcattgagaaaggcctggtgacgtacatggcg
ctgggcttggccttacgatatgtcctggaagccttgcgcaaacctttcggatcaaagatg
tattactttgggatcgctgcactagatagatttaaaaatagactgaaggactatccccaa
tactgtcagcacttggcatcaatagcccatttcttgcagtttccgcaccatttacaagag
tatatagagtacggtcagcagtccagagaccctcctgtgaagatgcaaggctccattacc
acccctggcagcctggctttagcccaggctcaagctcaatctcagacccccaaagccccc
caacctggccaagccagcaccttagtgaccacagcaaccacaactaccactgctgccaaa
accaccaccatcacgagacctacagctgtcggaccgaagaaggacgtgccaccgtcaatc
aacacaacaaacattgacactttgctggtggccacagaccagactgaaaggattgttgag
cccccagagaatgttcaggagaagattgcattcatcttcaacaacttgtcccaatcaaac
atgtcccaaaaggtggaggagctgaaagagactgtgaaagaagaattcatgccctgggtc
tctcagtacctggttatgaagcgtgtcagcattgagcccaacttccacagcttgtattca
aactttctggacacactgaaaaacccagagtttgtcaagatggttctcaatgagacctac
agaaacatcaaggtccttcttacctctgataaggcagctgctaacttctcagatcgatcc
ctgctgaagaatttgggtcactggcttggaatgatcaccttagctaaaaacaaaccaatt
ctttacacagacctggagctgaaatctctcttgctggaggcttatgtgaaaggccaacag
gagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagtctacggagtgtg
atcttcagaccgcagaacccttggaccatgggcatcatgaatgtactggctgagctccac
caggaacatgacttaaagcttaatcttaagtttgagattgaggtgctttgcaagaacctg
tctttggacatcagtgagctgaaaccaggaaatctactgagagacaaagagaagctgaag
aacttagaggagcagctctctgcaccaaagaaagagaccaagcctcccgaagagatgctg
cctatagttacaacagattctgtaccgtttacagctgcaccctcggccccggccaccacc
acgacctgtacggcaactgggccacccacaccacagttcagctaccatgacatcaatgtg
tacgccctggctggcttggccccacacatcaacatcaatgttaacatcccactgctacag
gcccaccctcagctgaagcagtgcgtgagaccagcaattgagcgtgctgtacaggaactg
gtgcaccctgtggtggaccgatccatcaagatcgccatgaccacctgcgagcagatagtc
aggaaggattttgccctagactctgaggagtctcacatgcgcgtggccgcccaccacatg
atgcgtaacctgaccgccggcatggccatgatcacctgcagagagcctctgctcatgagc
atcgccaccaatctgaagaacagctttgctgcagcccttagggctcccacacctcagcag
agagagatgatggaagaggcagctgctcgtattgcacaggacaactgtgagcttgcttgt
tgctttatccagaagacagcagtggagaaagctggacctgagatggacaagaggctggca
actgaattcgagctgaggaagcatgctcgccaagaaggccgtcgctactgtgacccgatg
gtgctcacctatcaagctgagcgtatgccagagcagatcagactgaaggtcggtggagtg
gatcctaaacagctggctgtttatgaggagttcgcccgaaatgttccaggcttcctaccc
agtaatgacctgtctcagcccactggtttccttgcccaaccaatgaagcaacaggcatgg
cccactgatgatgtggctcacatctacgataagtgcatttcagacctggagcagcacttg
catgcaattccacctgcactggccatgaacccacagacccaggccatacgcagccttctg
gaggccgttgtcatggctaggaactcccgtgatggcatcgctgcccttggccttttgcaa
aaggctgtcgagggtctgctggatgccaccagtggcgctgatactgatcttttgctaagc
tacagggagtgccatctactggtgctgaaagccctacaggatggtcgtgcttacggccca
cagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagatgaatataaatac
aacgttgaggctgtggagctcctcatcagaaaccacctggtcaacatgcagcagtatgac
ttacacctggctcagtccatggagaacgggctcaactacatggccgtggcattcgccatg
cagctggtgaagctcctgctggttgacgaacgcagcgtgagtcacatcactgaggcagat
ctcttccacaccattgagacgctgatgaggaccaatgctcactccagagccaatgctcct
gaaggtttgccccagctgatggatgttgtccgctccaattacgaggccatgatcgatcgt
caccatggtgggccaaacttcatgatgcactctggtatctctcaagcctccgagtatgat
gacccaccaggccttagagagaaggcagagtacctgctgagggaatgggtcaacctgtac
cattcagctgctgcaggcagagacagcaccaaggccttctctgcattcgttggccagatg
caccagcagggcatcctgaagaccgatgacctgatcactcgcttcttccggttgtgcaca
gaaatgtgcgtggaaatcagttaccgggctcaagccgaacagcagcacccgaccaccagc
cccgccatcatcagggccaagtgctaccacaacctggatgcttttgttaggctcattgcg
cttcttgtcaaacactccggagaggccaccaacacggttaccaaaatcaacctgctcaac
aaggttggaatgcttacaatggttctgggcattgtggtgggtgtgttgatccaggatcac
gatgtgaggcagacagagttccagcagcttccataccacagaatcttcatcatgcttctg
ctggagcttaacgcaccagagcatgtgctggagaccatcaacttccagaccctcactgcc
ttctgcaacaccttccacatcctaaggccgactaaagcacccggatttgtctatgcttgg
ctggagctcatctcgcaccgcatcttcattgccaggatgcttgcgcataccccacaacag
aagggttggccaatgtatgcccagctgctgattgacttgttcaagtatcttgcacccttc
ctaaggaatgttgagctcaacaaacctatgcaaattctctacaagggaacacttcgtgtg
ctgcttgtcctgctacatgacttcccagaattcctgtgcgactaccattatggcttctgc
gacgtcatcccacccaactgcatccagctgaggaatctgatcctgagtgccttcccccgc
aacatgaggcttccagaccccttcacccctaatctgaaggtggatatgctgagtgagatc
aacatcgctccccgcatcctcacgaacttcaccggtgtgatgccgtcccagtttaagaag
gatcttgactcctacctcaagacccgttctcctgtcaccttcctctctgagctgcgcagc
aacctgcaggtgtctaacgagccaggcaaccgctacaacattcagctgatcaacgcgttg
gtgctgtacgttggaacccaggccatcgcccacattcacaacaagggtagcactccctcc
atgagcaccatcactcactcggctcacatggacatcttccagaacctcgcagtcgatcta
gacactgagggccgctatctgttcctgaatgcgatagccaatcagttgcgttatccaaac
agccacacacactacttcagctgtaccatgctgtatctgtttgccgaggccaacgctgaa
gccattcaagagcagatcaccagggtcctgctggagaggctgattgtgaacagaccgcac
ccgtggggtctgctcatcactttcattgagctgatcaagaaccctgcctttaagttctgg
agccatgattttgtgcactgtgccccagagatcgagaagttgttccagtcggtggctcag
tgctgcatggggcagaagcaggcccagcaggtgatggagggaacaggtgccagttag
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integrated database retrieval system
