Labeo rohita (rohu): 127157072
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Entry
127157072 CDS
T09007
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
127157072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127157072
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
127157072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Baculo_PEP_C
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
127157072
NCBI-ProteinID:
XP_050956259
LinkDB
All DBs
Position
25:14958032..14988007
Genome browser
AA seq
1568 aa
AA seq
DB search
MFNWVVKVVPHPPDSQEDLGEEAITANGKPSNRDKFSSTKTGREEDQSSQTSKDSVQSGM
LSWISNGFASTLPQPAGSPLLTRANSDAKSLQDEGSAERAGVIGWISQGIGKVVPQPDEK
YIQDETPQSEEVTEVYEANDLPDQEPLPHIPVVELVSEDEASEVEPAAQFSPNVMSWIKS
GLQNAIPHHVTRPPNSSSSSPRSSQCSNKVYSPPPESITSVTEIDSKTPSMVGWIVQGLG
LSLPQPVLKNKEDCLEDGKIVQNAGSAQLAPADLVLEEIDSEDEAQEKETCPTENSQSNS
QPQSEPQTPWSPEQSLPMSVTTPSQAHIELEDAETQTARWTPMIENIRKEAEDTAILIME
ERLIQERLAMARMAEEVARQTAEMAVRELAHARFGIQTIAEEPEDVDQELQVLQEEESDI
EVIRNQITECEVPSVKEFVPEGQEAEAVDTAVIVETPVEEFKSSSPVQEEPEEPEPESEP
EPEPEVLHDEEEPSDSEAEEEPEPITQQPQSITSTSVSRTDSPVESTAPEEESSVPSRCD
ALKRCFMRVPYAPQALDNFNQFLTDIGFTLPKVPSMPNLPPALSQITQQLPSLPPQLAQL
PQQISQRFSKITPQFPNQTLFSAPQFPSFPVQLSSLSQQLSNIPQRISNLPQKVSNFPQR
LTSIPRFSIFPQQVSNIPQQLSSIPQKISSIPQKITSIPQCAQRCYSNIQSRLNKLKPEQ
DAQGATAEEXDLELDRLVRQSPLHSPRTPSPSSPSSVLDLPNVPSYPRLPPITPSRQLSG
VSNPAFHIEDDPTSARPSVSSRLSVHPAVNVEDVDSDRGKGGRRSRPIPPIINPQDPNLK
TLTVPGARKANRTSVCRDRKPQTIWTKIKRLYSQDDEEEEELETAVRAWPSQSSISSADD
GLNQRPASSASQTSTVVNERLQELVKLFKERTERVKEKLIDPDNSDDDTPPASPAKQAPA
PPPEPPAEQKTEQEVPEASAEKEEEKTKLLCCKVKPQSRIGRLMRYRFPSSIDPFTNLIY
VLWLLCVSLAFNWNAWMIPVRWAFPYQTPDNIHVWLLIDYLCDAVYILDILAFQPRLQFV
YHGDIVSGKKEMRDNYIKAVRFKLDVVSLLPLELLYFKTGINPLLRLPRILKFMSFFEFN
KRLEAILTNAYVYRVIRTTTYLLYAVHCNACLYYWGSSFEGLGFSEWTYDGTGNSYFRCY
YFAVKTLLTIGGLPEPTTLFEIVFQLINYFIGVFVFSIMIGQMRDVVGAATAAQTNYRAC
VDNTVKYMASYRIPKDVQNRVKTWYSYTWQSQGMLDEQELLDQLPDKMRLDIAVDVSYNI
ISKVPLFQGCDRQMIFDMLKRLRSVVYLPGDYVCKKDEVGREMYIIKAGEVQVVGGPDGK
TVFVTLKAGAVFGEVSLLAVGGGNRRTANVVARGFANLLILTKKDLNEIMVHYPESQKLL
RKKARKMVNKDKKPAEKKEEEKEPIPIIPPRAETPKLLKAALEMTEKSGMKGTWSKLKDR
TNRSSVSLQNSISSSAALNSPVHEPLSDQDADTLSQISDSSMQIPTTPTGTGDGNVFAEE
GPAEEETK
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaggtcgtgccacatcctcccgattcacaggaggatctggga
gaggaggcgatcactgcgaatggaaaaccatcaaatcgagacaagttcagttcaaccaaa
acaggcagagaggaagaccaatcatctcaaacctcaaaggacagtgttcagagtggtatg
ttaagctggatctccaacggttttgcgagcacactgccccaacctgcagggagtcctctt
cttacgagagccaactctgatgctaaatcacttcaggatgaaggatctgcggaaagggct
ggagttattggctggatctcacagggaattggaaaggtggtgccgcagcctgatgaaaaa
tacatacaggatgaaactccacaatctgaggaagtcactgaggtttatgaggcaaacgac
ctcccagatcaggagcctttgccacatataccagtagtagaactggtgtcagaagacgag
gcgtctgaggtggaaccagccgcacagttctctcctaatgtaatgagctggataaagagc
ggcctccagaacgctataccacaccatgttacaagaccaccaaattccagttcttcttcc
ccgaggtcatcacagtgctcaaacaaagtttattcacctcctccagagtcaataaccagc
gtgacggagatcgattcaaaaactcccagtatggtgggctggattgttcagggcctgggt
ctgtcattgccacagccggtgcttaaaaacaaagaagactgtttggaggatgggaagatt
gtgcaaaatgcaggcagtgctcagttagctcctgcagaccttgttcttgaagagattgac
tctgaagatgaagctcaagaaaaggaaacatgtccaacagagaactcacaatcaaattca
caacctcagtccgaaccacaaacaccttggtcaccggaacagtctcttccaatgagcgtc
accacaccctcacaagctcacatcgaactggaggacgcagagacccaaactgcacgatgg
acgcccatgatcgagaacatcaggaaagaggcagaggacaccgccatattaattatggag
gaacggttgatacaggagcgtctggcaatggcccgaatggcagaagaggtggcacggcag
acagcagagatggctgtcagggagttggcacatgcccggtttggcattcagaccattgcg
gaagagccagaagatgttgatcaagaattacaagtgctgcaggaagaggaaagtgatata
gaagtcatacggaatcaaattacagagtgtgaagtaccttcagttaaagagtttgttcca
gaaggacaagaagcagaagccgtagacactgcggtgattgttgaaactcctgtggaggag
ttcaagtcctcttcacctgtacaggaggaaccagaggaaccagagcccgaatctgaaccc
gagcctgagcctgaggtgcttcatgacgaggaggagcccagtgacagtgaagccgaagaa
gaacctgaaccaatcactcagcaacctcagtccattaccagcacctccgtttcacgaact
gattcaccggtggagagtacagctcctgaagaggaaagcagtgtcccttctagatgtgat
gcactgaagagatgtttcatgcgtgtaccatatgcaccacaggcccttgacaacttcaac
cagtttctgacagacatcggcttcactttacccaaagtgccttccatgcccaatctgccc
cctgctctctctcaaatcacccaacagctgccgtcgctccctcctcaactggcacagctg
ccgcagcaaatttcccagcgattctccaaaatcacaccacaattcccaaaccagacgctt
tttagcgctcctcaatttcccagcttccctgtgcagctatccagcctctcgcaacagctg
tccaacattccacaacgaatatccaacctcccgcaaaaggtgtccaactttccacaaagg
ctgaccagcattccacggttttccatctttccacaacaggtttccaacattccgcaacaa
ctctccagcattccgcaaaaaatctccagcattccacaaaagataaccagcattccacag
tgtgcccagcggtgctactctaacattcagagccgcctcaataagcttaagccggaacag
gatgcccaaggagcaaccgcagaagagtaggatctggagttggaccgtctcgtccgccag
tcccctctccattccccccgtaccccttcgccctcttcccccagctccgtcctagacctt
cccaatgtgccctcttacccccgtctgccacccatcaccccttccaggcagttgtcaggc
gtctccaaccctgccttccacattgaggacgaccccacctctgctagaccctcagtgagc
tccagattgagtgtgcacccagccgtgaatgtggaagatgtcgattctgatcgagggaaa
ggaggaaggagatctcgccccataccaccaataataaacccacaggaccctaacctcaaa
accctcactgtccctggtgcccgtaaagccaatcggaccagtgtatgcagagacagaaaa
ccccagacaatttggaccaagatcaaaagactttactcacaagatgatgaggaagaggag
gagttggaaactgcagtccgggcctggccaagccagagtagcatctcaagcgcagatgac
gggctaaatcaacggccagcctcttcagccagccaaactagtactgtagtaaatgagagg
ttacaggagctggtcaagctgttcaaagagagaacagagcgagtcaaagagaagctgatt
gatccagataactcggatgatgacacaccacctgcctccccagctaagcaagctccagct
cctcctcctgaacctccagcagagcagaagacggagcaggaggtccccgaggcttctgct
gaaaaagaagaggagaaaacaaagctcctgtgctgtaaagtaaaacctcaatccaggatt
ggtcggcttatgcgctaccgttttccatccagcattgaccctttcacaaatctgatctat
gtactttggctgctttgtgtgtctttggcatttaattggaatgcgtggatgattcctgtg
cgttgggcatttccttatcaaacaccagataacattcatgtgtggctgttgattgactac
ttatgtgatgccgtctacatactggacatcctggcctttcaaccccgactgcagtttgtg
tatcatggagacattgtgtccggcaagaaagagatgagagataattacatcaaagctgta
cgattcaagctggatgtggtcagtctacttcctctggagcttctttacttcaaaacaggg
attaatccacttcttcgcttacccaggatcctaaagtttatgtctttctttgagttcaac
aagcgtctggaagctatactgaccaacgcttacgtttacagagttattcgaaccaccacc
tacctgctgtatgccgtccactgcaatgcctgtctgtactactggggctcttcatttgaa
ggtctgggtttctcagaatggacctatgatggaacaggaaatagttattttcgctgctac
tattttgctgtgaaaactttgctgaccattggtggcctgccagaacccacaacacttttt
gagattgtgtttcagctcatcaattactttattggagtgtttgtgttctccatcatgatt
ggtcagatgagagacgttgttggtgcagctactgcggctcagacaaactatcgtgcctgc
gtggataacacggtgaagtacatggcctcctatcgcatccctaaagatgtgcagaacaga
gtgaaaacctggtacagctacacatggcagtcccaaggcatgctggatgaacaagagtta
ctagatcaactacccgacaagatgagactggatatagcagtggatgtcagctacaacatt
atcagtaaagtgccactcttccagggctgtgatagacagatgatctttgacatgctgaag
aggctccgatcagtggtgtaccttccaggagactatgtctgcaagaaggatgaagtgggc
cgtgagatgtacattataaaggcaggagaagtccaggttgttggtggtcctgatggaaag
acagtgtttgtgaccctgaaagcaggagctgtgtttggagaggtcagcttgcttgctgtg
ggcggaggaaaccggcggacggctaatgttgtagcacgtggttttgctaacctcctcatc
ctgaccaaaaaagacctgaatgagatcatggtgcactatccagagtctcagaaactgctg
cgcaagaaagcaaggaaaatggtgaataaggataaaaagcctgctgagaagaaagaggaa
gaaaaggagcccattccgataattcctcctcgtgccgagacacccaaactgttaaaagcg
gcgctggagatgacagagaaatcaggaatgaaaggaacatggtccaaacttaaggacagg
accaacagatcgagtgtctctttgcagaactccatctcttcttctgcggcactcaactca
ccagtccacgaaccgctctcagatcaagacgcagacactctgtctcagatatcagacagt
tcaatgcaaatccccacgacccctactggcactggagacgggaatgtatttgctgaagag
ggcccagcagaggaggaaaccaaatag
DBGET
integrated database retrieval system
