Labeo rohita (rohu): 127165684
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Entry
127165684 CDS
T09007
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127165684 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127165684 (skic3)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127165684 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_16
TPR_17
TPR_11
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
Fis1_TPR_C
TPR_MalT
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
ARM_TT21_C
TPR_15
SHPRH_helical-1st
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
127165684
NCBI-ProteinID:
XP_050966495
LinkDB
All DBs
Position
5:15897488..15924559
Genome browser
AA seq
1567 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
TAYRKATELEPEQLLAWQGLANLYEKSDQADFKAELPKIYQKLITLYETSDKAKCFEVSK
KLVEIYQSEKNYLQVARVWRRLIQVREGEAGVENSELLELWKEMTRLLQDTVEDQDNETQ
QHLISAFERALEMTVDVPSETHRSLSQDYIKCLSKLPHEVAKLKEVCDATLSRYPTHSYP
LQALSEHYIRTGDCSEEAVGCFSRLSELDPNNSHAHFGLGIKACQDKKYEDAIKSISLGL
KSMCSSIIGWYNLALAQLKMHKYSDSATASSQGLKSSVANSDWTHKLQRLKIEALVRTGR
DQDADEALQILTQISDAKNDPVLLALKGKAHLQKGQTEEAFQVSAELLSSHPGSVEGLSL
KGLAHVAKEQYKQAEESFLEALSGSPDNGELFFLLGRLYWNMGEEMRRDRSKAHTHLLKA
AKLDPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFEMDSSDAEAGAATVDLSMEQGDMD
SALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECLG
EAYLNRRSFTAAMKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQEDYV
PALKGLGECLLALARSALDDYLDGRAVDLIQNAIHYIFRAVKQRPDLSCLWKLLGDACTT
SRIVSPNRAKVLVPGALCGMDPPDQSQTLDQRQLLTLGERCFGRALKLMPEAPSLWCDLG
LNYHHQSRLLSCLYPEENPQPLLEKAVQCVKKAIMLDSANHTYWNALGVVAMAKGIENFA
LAQHCFIKSIKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQALI
AETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSKRDSEVYLYNIVQMNAVSA
AQVALSKYTERIQTDPDAFIMLGYLNTHLQLRKQATEAYRRAVELLQASPHTDKLSFALR
GYGRALSDDGQWEEAVRIYSSTHLEELHDLIGLALACFRIGRLPESVQAYEKALAVASSE
KEKACILTALALIQHRLGSIDHAKTLLFKCSMLKEPVPESLQCLCALGLVHGDVTLASAT
LTELLKLKDAVGGAVEDRCLLTCTLLALQGNFSGVHREASRAIHRNPGNPSLWALLSRLV
PQYCPNKADGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGQDRKRNALKTIQRAV
LLCPDDPAGWAGLMAACHTENTACLLTGSAPHREDLERAHMTLVSEKVKGLQTEDGLLAQ
ALEGWVLQQAVTGLKQSSQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLLLSEAGNR
VPPAVLDQLSAAVMANHTSVSAWHWLAEVYRSQGLLAQASVAYKQSLQVASQLGDHIGKM
SSLLRLALLALRPCLAGVCVSEWKNLVLEASAEVLKMGSSPVALLFQALLQFSIKIGARE
TRRLLEKIVYASASGSSETIASVARWYLLRHLHAKDDLELIDTLLVKAEAAGDSRLVDFH
KRLYPSS
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtaaagaagtaaaagctgaactaaaaagtgccagggaagccatcaaaaataaa
gagtttaaagaagctttgaaacattgtaaggctgttctcaaacttgagaagaataactat
aatgcctgggtgtttattggagtggcagctacagagctgcagcagccggatcaggcacag
accgcctacagaaaggccactgaactggagccagaacaactgcttgcatggcagggttta
gcaaatctgtatgaaaaaagtgaccaagcagatttcaaagctgagctgccaaagatttat
cagaaacttattacactgtatgaaacttcagacaaagcaaaatgttttgaagtgagcaag
aagttggtggaaatctatcagtcggagaagaactacttacaggtggccagagtgtggcga
aggttaattcaggtgagggagggagaggcaggtgtggagaattcggagctgctggaactg
tggaaggagatgaccagactcctgcaggacactgttgaagatcaggacaatgagactcag
cagcatttgatatcagcatttgaaagagctttggaaatgacagtagatgtacccagtgaa
acccacagaagtctttcacaggattacattaaatgtctttctaagcttcctcatgaggtg
gccaagctaaaggaagtttgtgatgccacactgtcccgctatccgacacactcctaccct
ctacaggccctcagtgagcactacatcagaacaggtgactgcagtgaggaagctgtcggc
tgtttcagccgtctctcagaactggatccaaacaactcacatgctcactttggtctcggt
attaaagcttgtcaggataaaaaatatgaggatgccatcaaaagtattagtctaggactg
aagagtatgtgctcctccatcattggctggtataatctggctctggctcaactaaaaatg
cataaatactctgacagtgccacagcttccagccaagggctgaagtcgagtgtggcgaac
tctgattggactcataaactgcagaggctgaaaatagaggctctggtgaggacaggaaga
gaccaggatgctgatgaagctctgcagatccttacacagatttcagatgccaaaaatgac
ccagtgcttttagcgttgaaaggaaaagctcacttgcaaaaaggtcaaactgaggaagca
tttcaggtttcagctgagctgctgagctctcacccaggatccgtagagggtctcagtctg
aagggcctggcacatgttgctaaagaacagtacaaacaagctgaagagagctttctagag
gctttatctggaagtccagataatggggagttgttctttctcttggggcgcttgtactgg
aacatgggagaggaaatgcgaagggatcgcagcaaagcccatacgcatttactcaaggct
gctaaactggacccgtatcttggttcagtgtttcgtttcctgggtcattactatagagag
gtagcaaaggatcaaggcagagctagaggctgctataagcgagcgtttgagatggattca
tctgatgcggaggctggagcggctactgtagacctcagcatggagcagggggacatggac
tcagctctgactgttctgcagtccgtaacagagagagccactcctggctctgctaaatgg
gcctggatgaggagaggtctctaccacctcaagattggccagcatcaacaggccattgca
gatctgcaggcggcgttgagggctgatcctcaagactgggtgtgctgggaatgtttaggt
gaggcttacctgaaccgcaggagtttcacagcagccatgaaagccttcgataaagcacat
acattgcagcccacttctatctacagcctctatcagaccgccgccatcaaacagatcctc
ggccggtttaaagaggccgctgctgagtacaggcagatcttagagcaggaggactacgtc
ccggcactgaaaggtctgggtgaatgcttgctagccctggctagaagtgcactggatgac
tatcttgatggaagagctgtagatctgatacagaacgccattcattacatcttcagagct
gtaaagcaaaggccagacctgtcgtgcctgtggaagttactaggtgatgcctgcaccacc
tccagaattgtgtccccaaaccgagccaaagtgctggtgcctggagctctatgtggaatg
gacccacccgatcagagccagacactggaccagagacagctcctcactctaggagaaagg
tgttttggtcgtgctttgaaactgatgcctgaggcccccagtctgtggtgtgaccttggc
ctgaactaccaccaccaatccagactgctcagctgcctgtatcctgaagagaatccgcag
cctctgctggagaaagccgtgcagtgtgtgaagaaggcgatcatgctcgacagtgcaaat
cacacatactggaacgccctcggggtggtcgcgatggccaagggaatagaaaactttgca
cttgctcaacattgctttatcaaatcaataaaagctgaatcaaataatgtggttgcgtgg
accaaccttggtgctttgtatctgaagaagggaaatatagagctctctcatgaagctttc
aaaattgctcagtctctagagcccctctatgtgaactgctggatcggacaggccctcatt
gctgagacagtgggcagttatgacaccatggatctcttcagacacaccactgaactgagc
acacataccgagggcgtgaagggttatgcgtactgggtttgctctacactgctggacagg
agcaaaagagactctgaggtctacctctacaacatagtccagatgaacgccgtctctgct
gcccaggtggctctgagcaagtacactgagaggattcagacagacccagacgccttcatc
atgctcggatacctgaacacacacctgcagctgagaaaacaggccactgaggcatatcgc
agagctgttgagttgcttcaggcgtcccctcacactgacaagctcagctttgctctgagg
ggttacggacgtgccctcagtgatgatgggcagtgggaagaagcagtgcgtatttattcc
tccacacacctagaggagctgcatgatctcatcgggcttgcgctcgcctgtttcagaatc
ggtcgcctgccagagagcgttcaggcctatgaaaaagccctcgcagttgcctctagcgag
aaggaaaaggcctgtatactcactgcacttgccttgatacagcacaggctgggcagcatc
gatcatgccaaaactcttctcttcaagtgctctatgctgaaagagcctgtcccagagagt
ctgcagtgtctgtgtgctctgggtttggttcatggtgacgttaccctggcaagtgctacg
cttactgagctgcttaaactgaaggatgctgtaggaggcgctgtggaggaccgctgtctg
ctcacttgcaccctgctggccctgcagggcaactttagcggcgtacacagggaggcttct
agggctatacacaggaacccaggaaatccatctctctgggctcttctctccagactggtc
ccacagtactgccccaacaaagctgatggaggtgctgtggccggcagtgtggcgtgtcat
gccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaatcagttggcctca
ggccggcactctggacaggacagaaaacgcaacgctctgaaaacaatccagagagctgtg
ctgctgtgcccagacgatcctgctgggtgggcggggctaatggccgcctgtcacacagag
aacacagcatgcttactcacaggctctgcccctcacagagaagatctggagagggcgcac
atgaccctggtgtctgaaaaagtgaagggcctgcagacagaggacgggctcttggctcag
gctctggagggctgggtgctgcagcaggctgtgactggactcaaacagagcagccaatat
gaccaggcagagactctttgctcccaggttctgagtgtttcaccagagcatcctgtggtg
ttcctgatgttaaggcaggttcagtgtgagcgcctcctgttgtctgaagctgggaaccgt
gttcctcctgcagtgctggatcagctcagtgctgctgtcatggccaaccacacatctgtg
tccgcctggcattggttggcagaagtgtaccgctctcagggtctgttggctcaggcctct
gtggcatataaacagagtcttcaggtggcctctcagctcggtgaccacatcgggaaaatg
agcagcttgctccgactagccctgctggcgctcaggccatgtttggctggtgtctgtgtc
tctgagtggaagaatctggtgttggaggccagcgctgaagtcttaaagatgggcagctca
ccagtagctctgctcttccaagccttactgcagttctctataaagattggtgccagggaa
actcgccgactgttggaaaagattgtttatgcttcagcctcagggagctctgaaacaata
gcatcagtggcacgttggtacctcctgcgccacctgcacgccaaagatgacctggagctg
atagatactttgttggtgaaggctgaagctgcaggagacagcagattggtggatttccac
aaacgtctttacccatccagctga
DBGET
integrated database retrieval system
