Labeo rohita (rohu): 127168278
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Entry
127168278 CDS
T09007
Symbol
capn1
Name
(RefSeq) calpain-1 catalytic subunit isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04141
Protein processing in endoplasmic reticulum
lroh04210
Apoptosis
lroh04217
Necroptosis
lroh04218
Cellular senescence
lroh04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127168278 (capn1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
127168278 (capn1)
04217 Necroptosis
127168278 (capn1)
04218 Cellular senescence
127168278 (capn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127168278 (capn1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lroh01002
]
127168278 (capn1)
Enzymes [BR:
lroh01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
127168278 (capn1)
Peptidases and inhibitors [BR:
lroh01002
]
Cysteine peptidases
Family C2: calpain family
127168278 (capn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_5
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
127168278
NCBI-ProteinID:
XP_050970947
LinkDB
All DBs
Position
7:46373463..46402819
Genome browser
AA seq
704 aa
AA seq
DB search
MEPIYATGMAAKLRSQWDRDAGLGQNHNAVKLLGQDYDSLRAQCLQTRCLFEDHLFPATA
SSLGFNELGPRSSKTHGVRWMRPTEMCKRPQFITDGATRTDICQGALGDCWLLAAIASLT
LNDDLLHRVVPHGQSFDSCYAGIFHFQFWQFGEWVDVVIDDRLPVKDGKLLFVHSAEGEE
FWSALLEKAYAKLNGCYEALSGGSTSEGFEDFTGGVIETYELKKAPADLYSIIARAIERG
SLLGCSIDITSKFDMEAVTFKKLVKGHAYSVTGVEEVVYRGNMTKLVRIRNPWGEVEWTG
AWSDDSREWDNVDRSVRGKLQNRSEDGEFWMSFSDFLREFSRLEICNLTPDALQASHLKK
WSTSVYQGEWRRGSTAGGCRNYPATFWINPQFKVALKHPDSPGQSDCSFLVALMQKDRRK
KRREGQDMETIGFAIYEVPREFVGNSGVHLKRDFFLTHASSARSELFINLREVSSRFRLP
AGEYIIVPSTFEPQKEADFVLRVFSEKPANSEEMDDKVTADIPEEKRLDESQIDAGFKSL
FRQLAGPDMEISTTELQTILNRIISKHKDLKTDGFGKESCRSMINLMDTDGSGKLGLTEF
HVLWEKIKRYLQIFRDHDVDKSGTMSSYEMRKALDAAGFKLNNHLFQLIILRYTEQDLSV
DFDNFVTCLVRLETMFKTFKTLDTDADGFISLTFFQWISLTMFA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggagcccatttatgccacgggaatggccgcaaagctgcggagtcagtgggatcgggat
gcgggtttgggtcagaaccacaatgctgtcaagttgctgggacaggattacgactcgctg
agggcccaatgcctacagactaggtgcctgtttgaggaccacttgttcccagccaccgct
tcttctctggggttcaatgagttgggcccacgatcctccaagacacacggtgtgcggtgg
atgagaccaacggagatgtgtaagcgtccccagttcatcacggatggagcgactcgtact
gacatctgtcagggagctctgggtgactgttggttgttggcggccattgcatctttgact
ctaaacgatgacctcctgcaccgcgtggtgccgcacggccagagctttgacagctgctac
gctggaatatttcactttcagttctggcagttcggcgagtgggtggatgtagtgattgac
gaccggttgcccgtgaaggacgggaagctgttgttcgttcactcggcggagggtgaagag
ttctggagcgctctgctggagaaggcctacgccaagctgaatggctgttatgaggctctg
tcgggcggcagcacgtctgagggctttgaggacttcacgggtggagtcatagagacgtac
gagttaaagaaagcacccgctgacctctacagcattatcgcccgtgccatcgagagagga
tcactgctgggctgctctatagatatcaccagtaagtttgacatggaggcggtgaccttc
aagaagctggtcaaaggtcatgcatactcagtgactggagtggaagaggtggtgtacagg
ggaaacatgactaaactggtgcgcatcaggaacccgtggggtgaagtggagtggacggga
gcctggagtgacgactcccgggaatgggacaatgtagaccgctccgtccggggcaaatta
cagaaccgcagcgaggatggagagttctggatgtcgttcagtgattttctgcgtgagttc
agtcggctggagatctgtaacctgacgccagacgctctccaggcaagtcatttgaagaag
tggagcacatctgtctatcagggcgagtggaggagaggaagcacagccggcggctgcaga
aactacccagccacattctggatcaaccctcagttcaaggtggccctaaaacacccggat
tctcccggccaatcggattgcagcttcctggtggcactgatgcagaaggaccgcaggaag
aagcggagagaaggacaggacatggagaccatcggattcgccatttatgaggtgccaaga
gagtttgtggggaattcaggtgttcatctgaagcgggatttcttcctcactcacgcgtcc
agtgctcgctcagagctcttcattaacctgcgggaggtgagctcacgcttccggctgccc
gccggcgagtacatcatcgtaccctccacattcgagccgcagaaagaggccgactttgtg
ctcagagttttctctgaaaaacccgccaactcagaagaaatggacgataaagtcacagct
gatattcctgaggagaaacgtctggatgagagtcagatcgacgccgggtttaagagtctc
ttcaggcaactggctggaccggacatggagatcagcacaacagagctgcagaccatcctg
aacagaatcatctccaaacataaagatttaaagacagacgggtttggtaaagagtcgtgc
cgcagtatgattaacctcatggacacggatgggagcgggaagcttggactcacagaattt
catgtcttatgggaaaagattaaacgctacctgcaaatctttagagaccatgatgtagat
aaatcgggtactatgagctcttatgaaatgaggaaagctctggacgctgcagggtttaag
ttgaacaatcatttattccagctgatcatccttcgatacacagagcaagatctgtctgtg
gattttgacaactttgtcacctgtttagttcgactggagaccatgttcaagacctttaag
acgctggacacagatgctgatggattcatatcgctcacgttctttcagtggatttctctg
accatgtttgcctga
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