Labeo rohita (rohu): 127170895
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Entry
127170895 CDS
T09007
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127170895 (scn1laa)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
127170895 (scn1laa)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Zip
Microp_apicomplexa_2
Motif
Other DBs
NCBI-GeneID:
127170895
NCBI-ProteinID:
XP_050975167
LinkDB
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Position
9:complement(33155622..33220957)
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AA seq
1968 aa
AA seq
DB search
MAQSFTPPGPKSFRKFTRESLKAIESRIAEENARKSKDKQERNKDDGCRKKPNSGLEAGK
SLPFIYGDVPRGLVSTPLEDLDQFYSNQTTFIVVNKKKTISRFNAAPALYIFSPFNPLRR
ISIKILVHSLFSMFIMFTILANCAFMVYSQPPEWAKNVEYAFTGIYTFEALIKIVARGFC
VGNFTFLRDPWNWLDFMVIVMAYVTEFVDLGSVSALRAFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTLFCLSVFALVGLQLFMGALRHKCVLQPSNYNLTYYITNNTEECSK
IDDCRDYINNQSNHYFPTGKKDALICGKSTDAGQCPENYVCIKAGPNPDYGYTSFDSFGW
AFLSLFRLMTQDYWENLYQQTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQN
QATIDEALKKEEEFNAMLQQLMRQEEEAQAAAEASKCDGLSGEKTDSSSDASKLSSKSAK
ERRNRRKKRQRQGGDEKEDDSNKEGNDRKPSIHFTADGKIQRSRERACTSSQQAPLSFQG
SILTPRRDSKGSVFSFRGRVHSENNYADDEQSMCEETASRRDSLFLPSRLYSTHSKSSLT
PRMLLPSNGKARYMVDSNGIVIVSGGASSPNSPSGMLTPEVTRKRATFDDTCFDTDEEYR
RRCDSKISRSFLYDQSVRQRALSVASGSNNTIDPSEVWKQKCVEYWFEFAENYLIWDCSP
TWLKIKKIVNMIVMDPFADLFITICIVINTVFMAMEYYPMEAQYITMLSTANVVFIAIFT
AEMIFKIIALDPYTYFQEGWNIFDSIIVTLSLLELCLTNVVSGIGFLRPFRLLRVFKLAK
SWPTLNMLIKIIGNSLGALSNLTLVLAIIVFIFAVVGMQLFGKNYRDCVCKISEDCTLPR
WHMNDFFHSFLIVFRVLCGEWIETMWDCMQVSGQPLCLIVFLMVMVIGNLVVLNLFLALL
LSSFSADNLTANESEGEKNNLQIAVDRIKRGAAVLKACLQNFFRSGCIRRRKPKKKADGN
VILRSCKGINDNSNHTTLELVKGTGGTDVDSDTENFISNPSLTVSVPIAVEESDFECLNT
EDFSSLSSDLEEDKEKLSDVAPSSSEGSTVDLRPLGKDGEDALDFELEESMDPDACFTPG
CVHKFPCCQVDVEKGMWKKWWLLRQTCYNIVEHSWFETFIIFMILLSSGALAFEDIYLES
RKTVKTILEFADKVFTYIFILEMLLKWVAYGFAKYFTNLWCWLDFIIVDVSLISLVANAL
QYSHLNAIKTLRTLRAFRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIV
GVNFFAGKFYECINVTSGKRVSIQEIRNKTDCENWGDEVGWKTVKINFDNVGNGYLALLQ
VATFKGWMPIMYAAVDSRGLYEQPEYEANLYMYLYFVIFIILGAFFTLNLFIGVIIDNFN
QQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPKNKIQGFIFDLVTRQAFDIFI
MVLISLNMVTMMVETEDQSTKMTNVLYWINIAFIVLFTSECVLKMFALRQYFFTISWNVF
DFIVVILSIAGMFLAQVIKKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSL
PALFNIGLLLFLVMFIYAIFGMSNFAYVKKSDGIDDMFNFETFGNSMLCLFQITTSAGWD
GLLAPMLNTNEPDCDPNKTFPGSEATSERKGDCGNPPIGIFFFVSYIIICFLIVVNMYIA
VILENFSVATEESAEPLSEDDFDRFYEVWEKFDPKATQFMEYDKLSDFANSLDPPLRIPQ
PNRLQLMSMDLPMVNGERIHCLDILFAFTKRVLGEGGEMDILRGQMEDRFMASNPSKSSY
EPITTTLRRKHEDMSAAIIQRAFRSHLVRHSMKKVRNVHRETRQQNGRVPSKASVDNDKC
NDSSGSEDSGATPVMSSPPSYNSLSQNGTNKYEKDKHEKEVEDKGNGV
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaatcgtttactccaccaggacctaaaagtttccgtaagttcacccgtgaatct
cttaaggccatcgagagccggatcgctgaggagaacgctaggaagtccaaggataagcag
gagagaaataaagacgatggatgtaggaagaaacccaacagcggcctggaggccgggaag
agtctgcccttcatatacggagacgttcccagaggactggtgtccacgccactggaggac
ctggaccagttctacagcaatcagacaacttttatagtagtgaacaaaaaaaagacaatc
agccgtttcaacgctgctcctgccttgtacatcttcagtcccttcaaccctctgaggaga
atatcaattaagattttggtacattcattgttcagtatgtttataatgttcactatactg
gcaaactgcgctttcatggtctactcacaacctccagaatgggccaagaatgtagaatat
gccttcactgggatatacacctttgaagcgctcataaagatcgttgccaggggattctgt
gtgggaaattttacgttccttagagacccatggaactggttggattttatggtcatagtc
atggcatatgtaacagagtttgtggatctgggtagtgtgtccgccctgcgagcgttcaga
gttcttcgagccctgaaaactatatcggtcatcccagggctgaaaacaatcgttggagct
ctgatccagtcagtgaagaagctgtcagatgtgatgatcttgacccttttttgcctaagc
gtctttgcattggtcggtctgcagctgttcatgggagctctaagacataaatgtgtgctc
cagccatccaattacaacttaacttattatattactaacaacacagaagaatgttcaaaa
atagatgactgcagggattacattaacaatcagagtaaccattatttcccaacaggaaag
aaagatgctctgatctgtgggaaaagtactgatgctgggcagtgtccagaaaattacgtc
tgtataaaagcaggtcccaatccagattacggctacacaagctttgattccttcggctgg
gccttcctttccttattcagactgatgactcaagactactgggagaatctttaccaacag
actcttcgggccgcaggaaaaacctacatgatttttttcgtgctggtcattttcttggga
tccttctaccttgtgaatctgatcctggctgtggttgcaatggcatatgatgaacaaaat
caagccactattgatgaggctttgaagaaagaggaggagtttaacgccatgctccagcag
ctcatgagacaggaagaggaagctcaggctgcagccgaagcgtccaagtgtgatgggctc
agtggagaaaagacggattcttcctcagacgcgtccaaactcagctccaaaagtgccaaa
gaaagacgcaaccgcaggaaaaagagacagcgtcaggggggagatgagaaagaagacgac
tcaaacaaggagggaaacgataggaagcccagcatccactttacagctgatggaaaaatc
cagcgctcacgtgaaagggcttgcacgtcttcacaacaggcccccctgagttttcagggc
tcgatcctcaccccacgtcgggacagcaaaggtagcgtcttcagcttccgcggccgtgtg
cattcagaaaacaactatgccgacgacgagcaaagcatgtgtgaggagacggccagcagg
agagactctctgtttttaccctctcggctttacagcactcatagcaaaagcagtctgacg
ccacgtatgctgttgccgtctaacggaaaagcacggtacatggtcgacagcaatggcata
gtcatagtgtcgggcggagcttcttcacctaactccccctccggaatgttgacgccggag
gtgaccagaaaaagagccacgtttgacgacacttgctttgacacagatgaagaatatcga
cgtcgatgtgattcgaagatttcgaggtcttttctatatgaccaatcagtgagacagcga
gctttgagcgtagcaagtggcagcaacaacactattgacccgtcggaggtctggaaacag
aagtgtgtggagtactggttcgagtttgcagagaattatttaatctgggattgcagtccc
acatggctgaagataaagaaaattgtcaacatgattgtgatggacccctttgcagatctg
tttatcaccatttgcattgtgataaacacagtattcatggccatggagtattacccgatg
gaggcccaatatatcaccatgctttcaactgccaatgtggtattcatagccatctttaca
gcggaaatgatattcaagatcatcgcattggacccgtacacttactttcaggaaggctgg
aatatcttcgacagcatcatagtcacgctgagtcttctggaactttgtttgacaaatgtg
gtgtctggaatcggttttcttaggccattcagactgctgagagtcttcaaactagctaaa
tcctggccgactctgaacatgctgatcaagatcattggcaactcactaggcgccttgagc
aacctgacgcttgtgctggccatcatcgtcttcatcttcgctgtggtgggcatgcagctg
ttcggcaagaactaccgtgactgtgtatgcaagatttctgaggattgcacgcttcctcgc
tggcacatgaacgacttcttccactcgttcctgatcgtcttcagggtgttgtgcggagag
tggatcgagaccatgtgggactgcatgcaagtgtcgggacagccattgtgcttaattgtg
ttcttgatggtcatggtaatcggaaatctggtggttctgaacctgttcctcgctctgctg
ctcagctcgttcagtgccgacaacctcacagccaacgaatccgagggcgaaaagaacaat
ctgcagatagcggttgatcgaatcaagagaggtgctgctgtacttaaggcctgccttcag
aatttcttccggagcggctgcataagaagaaggaagccgaaaaagaaagcagatgggaat
gtgattttgagaagctgcaagggaataaatgataactccaaccacaccacactagagctg
gttaaaggcactggaggaacggacgtggatagtgacaccgagaattttatcagcaaccca
agcttgaccgtcagtgtcccgatcgctgttgaagagtctgactttgagtgcctcaacact
gaggatttcagtagcctttcttcagacctagaggaggacaaagagaagctgtctgacgtg
gctcccagctcttcggagggcagcaccgtggacctcagacccctcggtaaagatggagaa
gatgctttggactttgaacttgaggaatctatggatccagatgcctgtttcacaccaggt
tgtgtccacaagttcccgtgctgccaagtggatgttgaaaagggcatgtggaagaaatgg
tggctgctgagacagacgtgctataacatagtggagcacagctggtttgagaccttcatc
atcttcatgattctgcttagcagtggcgctctggcgtttgaggacatttaccttgaatca
aggaaaaccgtaaaaaccatcctggagtttgcagacaaagttttcacctacatcttcatc
ctcgagatgctgttgaaatgggtcgcgtatggttttgccaaatacttcaccaatctctgg
tgctggctggattttattatcgttgatgtctctctgatcagcctggtggccaacgccctg
caatattcacatctgaacgccatcaaaactctccgaacgctaagagccttccgaccgctc
cgagctctctcgcgctttgagggaatgagggtggttgtcaatgctcttctgggcgccatc
ccctccatcatgaacgtcctgctggtctgcctcatcttctggctcatttttagcatcgtg
ggtgtcaacttctttgccggaaagttttatgaatgtataaacgttacctcgggaaagcgt
gtgtctatccaagaaatccgtaataaaacagactgtgaaaattggggcgatgaagttggc
tggaaaactgtgaagattaactttgacaatgtgggaaatggatatctggccctgctacaa
gtggccacttttaaaggatggatgcccattatgtatgcagcagtagactctcgtggttta
tatgagcagccagaatatgaggcgaatctgtacatgtacctctattttgtcatcttcatc
atacttggagcttttttcacattaaatctcttcattggcgtcatcattgacaacttcaat
cagcagaagaaaaaatttggaggtcaagatattttcatgacagaagagcagaagaaatac
tacaacgctatgaagaagctcggctcaaagaaacctcaaaaacccattccaaggccaaaa
aacaagatccaaggattcatctttgaccttgtaactagacaggcctttgacattttcatt
atggtcctcatctcactcaacatggtcactatgatggtggagacggaagatcagtccaca
aaaatgaccaacgtgctgtactggatcaatattgcattcattgtgctcttcaccagcgaa
tgcgtgctaaagatgtttgcgctacgtcagtacttcttcaccatcagctggaacgtattc
gactttatcgttgtcatcctgtctatagctggcatgttcctggcacaagtcattaagaag
tactttgtctcgcccaccttgttccgcgtcattcgcctcgcccggatcggccgcgtactg
cgtctcatccgaggcgccaagggaatacggacccttctgttcgcgttgatgatgtcactt
cctgcccttttcaacatcggactccttctctttcttgtcatgttcatctacgccatcttc
ggcatgtccaacttcgcctacgttaaaaaatcggacggcatcgatgacatgttcaacttc
gagacgttcggcaacagcatgttgtgcttgtttcagatcaccacctcggcaggctgggac
ggccttctggcgcccatgttaaataccaatgaacccgactgcgacccgaataaaaccttc
cctggcagcgaggcgacttcggaaaggaaaggcgactgcgggaacccgcccattgggatt
ttcttcttcgtcagctacatcatcatatgcttcctgatcgtggtgaacatgtacatcgcc
gtcatcctggagaacttcagcgtggccaccgaggagagcgccgagcctttgagcgaagac
gacttcgataggttttacgaggtttgggagaagttcgacccgaaggccacgcagttcatg
gagtacgacaagctgtccgacttcgccaattctctggatccgcctctgcgaataccccag
cccaaccggctgcagctgatgtccatggatttgccgatggtgaacggcgaacgcatccac
tgtctggatatcttgttcgcgttcaccaaacgtgttctcggggaaggtggtgagatggac
atccttcgtggacaaatggaagaccgattcatggcctccaacccctcgaagtcctcttac
gagcccatcaccacaaccctgcgtaggaagcatgaagatatgtctgctgcgatcatccag
agagccttcaggagtcacttggtccgacatagtatgaagaaggtccgtaacgtccacaga
gagaccaggcagcaaaacgggagagtcccgagtaaagcgtctgttgacaatgataagtgc
aacgatagcagcggttcggaagactccggcgcaacgcccgtcatgtcctctccgccgtcg
tacaatagcctgtcgcagaacggcacaaacaaatacgagaaggacaaacatgagaaggaa
gtggaagacaaaggtaacggagtttag
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integrated database retrieval system
