Labeo rohita (rohu): 127175326
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Entry
127175326 CDS
T09007
Symbol
capn1a
Name
(RefSeq) calpain 1, (mu/I) large subunit a
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04141
Protein processing in endoplasmic reticulum
lroh04210
Apoptosis
lroh04217
Necroptosis
lroh04218
Cellular senescence
lroh04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127175326 (capn1a)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
127175326 (capn1a)
04217 Necroptosis
127175326 (capn1a)
04218 Cellular senescence
127175326 (capn1a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127175326 (capn1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lroh01002
]
127175326 (capn1a)
Enzymes [BR:
lroh01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
127175326 (capn1a)
Peptidases and inhibitors [BR:
lroh01002
]
Cysteine peptidases
Family C2: calpain family
127175326 (capn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
127175326
NCBI-ProteinID:
XP_050982291
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All DBs
Position
13:complement(29490490..29507708)
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AA seq
704 aa
AA seq
DB search
MFTYGGIVAQVSANRLQAEGVGSFEQALHFQNQDFEALKQECLEGGYLFEDPCFPAEPPS
LGFKELAPYSSKTRGVEWMRPTELCDDPQFIVGGASRTDICQGALGDCWLLAAIASLTLN
ERLLHRVVPHGQSFQDDYAGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGNEFW
SALVEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELRKAPRDLYRIIGKALERGSL
LGCSIDITSAFDMESVTFKKLVKGHAYSVTALKQVEFRGSTERLIRIRNPWGQVEWTGAW
SDNSPEWDEIDPSEKDDLHLQMEDGEFWMSFSEFLRQFSRLEICNLTPDALSDDDTSHWN
TIKFHGAWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDEEVACSFLVALMQKDRR
RYRRHGQDMHTIGFAVYEIPEEYAGCQNVHLKKDFFLTNSSSARSETFINLREVSTRLRL
PPGEYIIVPSTFEPSKEADFVLRVFTEKQSQTEELDDEISADLEDEAEITEDDIDDSFKA
LFAQLAGEDMEISVRELRTILNRVVSKHKDLKTDGFSMESCRTMVNLLDKDGSARLGLIE
FQILWNKIRKLLGIFREFDIDKSGTMSSYEMRLAVESAGFKLNNRLNQILVARYAENEVI
DFDNFVCCLIKLEAMFRSFQQLDRDGTGTAEMNLSEWLFMTMCG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttcacatatggaggaatcgtggcacaggtcagtgctaacaggctacaggcagaaggc
gtgggctcttttgagcaggctttacacttccagaaccaggattttgaggccctcaaacag
gaatgtttggaaggagggtacctgtttgaagacccatgcttccctgctgaaccaccctct
cttggcttcaaagaacttgccccgtattcctccaaaacccgtggtgtagagtggatgcgc
cctacggagctctgtgatgatcctcagttcattgtgggtggtgcctcaaggacagacatc
tgtcaaggagctctgggtgactgctggcttctcgctgctatagcctcgctgactcttaat
gaaagactccttcacagggtcgtccctcatgggcagagctttcaagatgattatgctgga
atattccactttcagttctggcagttcggtgagtgggtcgatgtcgtgattgatgatcgg
ctcccggtcaaagacggagagctcatgtttgtccattcagcagagggaaatgagttctgg
agtgccttggttgaaaaagcctatgctaagctgaatggctcctatgaagctctctctgga
ggatccaccactgaaggttttgaggattttaccggaggggtttcagagatgtacgagctc
cggaaagctccaagagacctgtaccgaatcatcggtaaagccttggaaagaggttccctg
ctgggctgctctattgatataaccagtgcctttgacatggaatctgtgacgttcaagaag
ctggttaagggtcatgcttactcagtgacggccctcaaacaggtggaatttaggggtagt
acagaaaggcttatccgcatccggaacccatggggtcaggttgaatggacgggggcctgg
agcgacaactctcctgaatgggacgaaattgacccatctgagaaggacgacttgcactta
caaatggaggatggagagttctggatgtcattcagtgagtttttgcggcagttctccagg
ctggagatttgtaatctgacccctgatgctctgagcgatgatgacacgagtcactggaac
accatcaagtttcacggcgcctggcggagaggcagtaccgcgggaggttgccgaaaccat
cccaacacgttctggatcaatccacagtataagatcacactgctggaggaagatgatgac
ccagaggatgaagaagtggcctgcagcttcctggtggctttaatgcagaaagaccgcaga
cggtaccgccgccacggacaggacatgcacaccatcggcttcgctgtctacgagatacct
gaagagtatgcagggtgtcagaacgtgcatcttaaaaaggacttcttcctgacaaactca
tcaagcgctcgctctgagaccttcatcaacctgcgcgaggtgagcactcgtctccgcctg
cctcccggtgagtacatcatcgtcccctccacctttgaacccagcaaagaggctgatttt
gtcctacgagtcttcactgaaaagcagtcacagacagaggagttggatgatgagatttca
gctgacctggaggatgaggcagaaattacagaggatgacattgatgactctttcaaggcc
ttgtttgcccagctggctggagaggatatggagatatctgtccgtgaactcaggactatt
ctcaacagagtagtctctaaacacaaggatttaaagacagatggcttcagcatggagtcc
tgcagaactatggtgaatctcttggataaagatggtagtgcacggttgggtttaatagag
tttcagatcctctggaacaaaataaggaagttgctggggatcttcagagagtttgatatt
gataagtcaggaactatgagctcttatgagatgcgtctggctgtagaatcagcaggcttt
aagctcaataacagactcaaccagatccttgtagccagatacgctgagaacgaggtcatc
gattttgataacttcgtctgctgcttgatcaaactggaggctatgttcagatcgtttcag
cagttggacagagatggaacaggaacggctgagatgaacctatctgagtggctcttcatg
accatgtgcggttga
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