Labeo rohita (rohu): 127180996
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Entry
127180996 CDS
T09007
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3 isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
127180996 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127180996 (cngb1a)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
127180996 (cngb1a)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
127180996
NCBI-ProteinID:
XP_050991392
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All DBs
Position
18:complement(29034515..29078635)
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AA seq
1319 aa
AA seq
DB search
MFSWVIKVVPQPPASPGKLAEEDQTHASTAAPATDVTKKEEVKQEPSKPTEEVSEENSSQ
SGVLSWLSHGFSNALPQPVNSSKLANSEVKHEGNAVSNSNTSDQAGMIGWIVQGLGKVVP
QPDEKYKGHTEPEEVTEPAIPVVKVDPPVQEVKDVRDAEPLPHIPVVEVVSDEEPDAANV
PFSPRVIEWIKHGFEKVVPHSPAHLRPPATTEAPAQKAASAPVTPCKQEPAPAPAPTPAP
APPPPPAPAPAPAPAPPPAPAAPPAPESAPAAPEQPQVAEDSKGTKMVGWIVQGLGRIIP
QPVLKSKGDSSDIVQNVCIMQDPCDMVLEEVDSEWEAQQREQALEQDVQVPQEGSSLLQV
LPNILPHVLAMQEQEDAETQTERWTPLIESIKKEAEETAIANIEERLQQERVEAARMAED
LARQAAELAVRQLEEEHTTQIIIDTKTEEPDNEDQLPNIQEEENEEDPELQPLHEESEEE
NEDSKITDADMKRSLVDVCPAEPSPHQSEVSDQAVHADPVSPPVTTQPERATFLPPDADQ
EEEPPEEGCGESTHVKPALKVEEVEDDEMTVPKIIVPSGIDSMTLTVPVPNLMSRSKAVD
LEMQEDMAPGEENEDSLMNPNKSDLLTVDEGLERPASAASQTSIVVNERLQELVKLFKER
TDRARDRLVDPDESDDESPSASPAKKPGEAPPPPPPPEEKKDDEEKAEEEVKIYEFMGYK
FPVPQFKMPQIPDWLRVILEYRFPSSIDPYTDLIYVVWLFFVSVAWNWNVWLIPVRCTFP
YQTTENIHWWLLMDYFCDGIYLLDIFVMQPRLQFVRGGDIVCDKKEMRDNYRRTERFKMD
VISLFPLDVLYVFTGVKSLLRFPRLLKYNAFFEFNDRLEAVMSKAYIYRVIRTSAYLLYS
LHCNACIFYWGSDYEGLGSTKWVYNGKGNSYIRCYYFAVKTLITIGGLPDPTTVFEIVFQ
LVNYFVGVFAFSIMIGQMRDVVGAATAGEAYYRHCVDSTVKYMSSYRIPREVQNRVKIWY
DYTWKSQGMLDEQELLIQLPDKMRLDIAADVNYSIVSKVALFQGCDRQMIFDMLKMLKSV
VYLPGDFVCKKGEIGREMYIIKAGEVQVVGGPDGTTVFVTLRAGSVFGEISLLAGGGGNR
RTANVKAHGFANLFILDKKDLAEILVHYPESQKLLRKKAKKMLTKDKKPADEKGQAKETG
EVIPQRPETPKLYKAALEVATGQTFAKLKEAYKGATLEPSTSGRTSTAPVPPPSPVHRRS
PIPRPRVPDEDDMVSETTDSTMIIRMTPRIEGEEILSVEVSPGEGEEMETEEPSKTEDE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctgggtgataaaggttgttccccagcctccagcatctcctgggaaactggca
gaggaggaccagacccatgcttccactgcagcaccagcgactgatgtgacaaaaaaagag
gaagtaaagcaagaaccttccaagccaacggaggaggtctcggaggaaaacagctctcag
agtggggttttaagttggctctctcatgggttcagcaatgctctccctcagccggtgaac
tcctctaaactggccaacagtgaagttaagcatgagggaaatgcagtgagcaacagtaac
acatcggaccaggctggaatgattggttggattgtgcagggactggggaaagttgttcca
cagccagatgagaaatacaagggtcacacagagccagaggaggtcactgagcctgccatt
ccagtggttaaagtggatcctccagtgcaagaggtcaaagatgttcgtgatgctgagccg
ctgcctcatattcctgtggtggaggttgtgtctgatgaggagccagacgctgctaatgtg
cccttctctcccagggtaatagaatggattaagcatggttttgagaaggtagttcctcat
tctcctgcccatcttcgtcctcctgctactacagaggcacctgctcagaaggctgcttct
gctcctgtgactccatgtaaacaagagccagcacctgcacctgcaccaacgcctgctcct
gcacctccgcctccacctgcgccagcgccagcaccagcaccagcacctccacctgcacct
gcagccccacctgcacctgaatctgcacctgcagctcctgagcaacctcaagtagctgag
gattccaaaggcaccaaaatggttggttggattgtacaggggctcggacgcatcatacca
caaccagtactgaaatcaaaaggggacagctctgatatcgttcaaaacgtctgcatcatg
caggacccgtgtgatatggtgctggaggaggttgactcagaatgggaggcccaacagagg
gagcaggccttggagcaggacgtccaagtgccgcaggagggctcttccctgctccaggtg
ctgcccaatatcctgcctcacgtgctggcaatgcaagagcaggaggatgcagagacccag
accgaacgctggactcctcttatcgagagcatcaagaaggaagcggaggaaactgccatt
gcaaacatagaggagagactgcagcaggagcgtgtggaagcggctcgtatggcggaggat
ttggctcggcaggctgcagaattggccgtaagacaactggaagaagagcacaccacacag
atcatcatcgacacgaaaaccgaagagccggacaatgaggatcaactgccaaatatccag
gaggaagagaatgaagaagatccagagttacagccactccatgaagagagtgaggaggag
aatgaggatagtaagatcacagatgccgacatgaaaaggagcctggtggacgtctgcccg
gcggagccctcgccgcaccagtctgaggtttcagatcaggcagtacacgcagatccggtc
tcaccacctgtgaccactcagcctgagcgcgccacatttttacctcctgatgctgaccag
gaagaggaacctcctgaagaaggatgtggagaaagcacccatgtgaagccagcactgaag
gtagaagaagtggaagatgacgagatgaccgttcccaaaatcattgtcccctcagggata
gattcaatgaccctcactgttcccgtaccaaatctgatgtcccgcagcaaagctgtggat
ttagaaatgcaggaggatatggctcctggtgaggaaaatgaagacagcctaatgaacccg
aacaagtctgatctacttactgtggatgaaggccttgagcgtccggcctctgcggccagt
cagacaagcattgttgtgaatgagcgtctccaggagctggtcaagctgtttaaagagcga
acagaccgtgcaagagacagactggtcgatccagacgagtctgatgatgaaagcccttcg
gcctctccagccaaaaagcctggtgaagctccacctccaccgcctcctccagaggaaaag
aaagacgatgaggagaaggctgaggaggaggtgaaaatctatgagtttatgggatacaaa
ttcccagttccgcagttcaaaatgccccagattcctgactggctgagagtcatactggag
taccgtttcccgtccagcattgatccctatacagacttgatctacgtggtgtggctgttc
tttgtgtcagtcgcatggaactggaatgtttggctgatccctgtgcgctgcacttttccg
taccagacgactgagaacattcactggtggctgctgatggactacttctgtgacggcatt
tatcttctcgacatcttcgttatgcagcccagactgcagtttgtgagaggaggggacatt
gtgtgtgacaaaaaagaaatgagagacaactacaggcgaacagagcgattcaagatggat
gtgatcagtctctttccattggatgtcctgtacgtcttcacaggcgttaaatcgctcttg
aggtttcctcgccttctaaagtacaatgcattctttgagtttaatgatcgtctggaagct
gtgatgagcaaagcctacatttacagggtgatccggacaagtgcatacctgctgtactct
ctgcattgcaatgcctgtattttctattggggttctgactatgaaggactgggttcgacc
aaatgggtctataatggcaaaggaaacagttatattcgctgctactactttgctgtgaag
actctgatcaccatcggaggtttgcctgatcctaccactgtctttgaaatcgtcttccaa
ttggtcaactactttgtgggagtctttgctttctctatcatgattggtcagatgagagac
gtagttggagccgccactgcaggtgaggcctattacagacactgtgtggacagcacagtc
aaatacatgagctcctacaggatcccccgtgaggtccagaaccgcgtcaagatctggtac
gactacacctggaagtcacaaggcatgctggatgaacaagagttacttatccagctgcca
gataagatgcgtttagacatcgctgcagatgtcaactacagcattgtcagtaaggtggca
ctctttcagggatgtgacagacagatgatatttgacatgctcaagatgctgaaatctgta
gtgtatcttccaggagactttgtttgtaaaaaaggtgagatcggccgagagatgtacatc
atcaaagctggagaggtgcaggtggttggagggcctgatgggacgacggtgtttgtgact
ttgagagctggctctgtgtttggggaaattagtttgcttgcgggtggtggcgggaaccga
cgaacagctaacgtaaaggcccatggttttgctaacctcttcatcctggataagaaggat
ctggcagagatcttagtgcactaccccgagtctcagaagctactgcgcaagaaggccaag
aaaatgttgaccaaagataagaagcctgcagatgagaagggccaggctaaagagacgggt
gaggtcatccctcagcgtccggagacacccaaactatacaaggctgcgctggaggttgcc
acaggacaaacatttgccaaactgaaggaggcatataagggagcaactctagagccgtcc
acctccggcaggacctccacagctccagtgccccctccctcacccgtgcaccgccgttca
cccattcccaggcctcgcgtcccagatgaagatgacatggtatcagagaccaccgacagc
accatgatcatccgcatgactccccgcattgagggagaggagatcctttccgtggaagtc
agtcccggagagggagaagagatggagacagaagagcccagcaaaactgaagatgagtga
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