Limosilactobacillus reuteri SD2112: HMPREF0538_21409
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Entry
HMPREF0538_21409 CDS
T01551
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase, delta subunit
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0538_21409 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lru03021
]
HMPREF0538_21409 (rpoE)
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_21409 (rpoE)
Transcription machinery [BR:
lru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0538_21409 (rpoE)
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0538_21409 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
Bac_luciferase
Motif
Other DBs
NCBI-ProteinID:
AEI57619
UniProt:
F8DL00
LinkDB
All DBs
Position
1419206..1419775
Genome browser
AA seq
189 aa
AA seq
DB search
MCTNLDLKVFDGQDKSELSMIEVAHAILAHHGEAMAFVDLTNEVQQYLGKSDEEIRERLA
QFYTDLNVDGSFISLGDNTWGLRAWYPFESIDEATVGENEEDEEDDRPKKKRRKVNAFLA
DTDDDDDVIDYDNDDPEDEDLDTDDDTDSEDDYDDDTDDFSDDDDDLDDGIEGQLSELHD
EEDEDEDDE
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaccaatttggatttaaaggtttttgacggtcaggacaaatcagaactttcaatg
attgaagtcgcacacgctattttagctcaccatggagaagcaatggcgtttgttgattta
accaacgaggttcagcaatatctgggtaagagcgatgaggaaattcgtgaacgtcttgca
cagttctatactgacttaaatgttgatggcagttttatttcccttggtgacaacacctgg
ggtctgcgtgcttggtacccattcgaatctatcgatgaagccacagttggtgaaaacgaa
gaagatgaagaggatgatcgtccaaagaagaagcggcgtaaagtcaatgctttcctcgca
gacaccgatgacgatgacgatgtaattgactatgacaatgatgatcctgaagatgaggat
cttgatactgacgatgacactgattctgaagatgattatgatgacgacactgatgacttc
agtgacgacgatgatgatcttgacgacggtattgaaggtcagctatcagaattacatgat
gaagaagatgaagacgaggatgacgaatga
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