KEGG   Lynx rufus (bobcat): 124529194
Entry
124529194         CDS       T08475                                 
Name
(RefSeq) LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DP alpha 1 chain-like
  KO
K06752  MHC class II antigen
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf04145  Phagosome
lruf04514  Cell adhesion molecules
lruf04612  Antigen processing and presentation
lruf04640  Hematopoietic cell lineage
lruf04658  Th1 and Th2 cell differentiation
lruf04659  Th17 cell differentiation
lruf04672  Intestinal immune network for IgA production
lruf04940  Type I diabetes mellitus
lruf05140  Leishmaniasis
lruf05145  Toxoplasmosis
lruf05150  Staphylococcus aureus infection
lruf05152  Tuberculosis
lruf05164  Influenza A
lruf05166  Human T-cell leukemia virus 1 infection
lruf05168  Herpes simplex virus 1 infection
lruf05169  Epstein-Barr virus infection
lruf05310  Asthma
lruf05320  Autoimmune thyroid disease
lruf05321  Inflammatory bowel disease
lruf05322  Systemic lupus erythematosus
lruf05323  Rheumatoid arthritis
lruf05330  Allograft rejection
lruf05332  Graft-versus-host disease
lruf05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    124529194
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    124529194
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    124529194
   04612 Antigen processing and presentation
    124529194
   04658 Th1 and Th2 cell differentiation
    124529194
   04659 Th17 cell differentiation
    124529194
   04672 Intestinal immune network for IgA production
    124529194
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    124529194
   05164 Influenza A
    124529194
   05168 Herpes simplex virus 1 infection
    124529194
   05169 Epstein-Barr virus infection
    124529194
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    124529194
   05152 Tuberculosis
    124529194
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    124529194
   05140 Leishmaniasis
    124529194
  09163 Immune disease
   05310 Asthma
    124529194
   05322 Systemic lupus erythematosus
    124529194
   05323 Rheumatoid arthritis
    124529194
   05320 Autoimmune thyroid disease
    124529194
   05321 Inflammatory bowel disease
    124529194
   05330 Allograft rejection
    124529194
   05332 Graft-versus-host disease
    124529194
  09166 Cardiovascular disease
   05416 Viral myocarditis
    124529194
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    124529194
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lruf04147]
    124529194
Exosome [BR:lruf04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   124529194
  Exosomal proteins of epithelial cells
   124529194
  Exosomal proteins of breast milk
   124529194
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3
Other DBs
NCBI-GeneID: 124529194
NCBI-ProteinID: XP_046959007
LinkDB
Position
Unknown
AA seq 258 aa
MHLEDIRFQTQVMILRVISLAALLSPHGTGAIKVGHVSTYVQFVQTHRPSGEYMFEFVED
EQFYVDLDKKETIWHLPEFIHAFNFDAWRGIADIVTAKKNLNTLIQRSNHTRATNEPPEV
AVFPKEPVELGQPNTLICHVDKFFPPVLNVTWLCNGQTVTKGVAESIFLPSTEFRFHKFH
YLTFIPTAEDVYDCKVEHWGLDQPLLQHWEAQEPIEVPETMETVVCALGLVVGVAGIITG
TIILKTRRPDHPWVQGPL
NT seq 777 nt   +upstreamnt  +downstreamnt
atgcaccttgaagacataaggttccagacccaagtcatgatcctgcgagtcatctccctg
gctgcccttctgagcccccatggaactggggccatcaaggtgggccacgtgtcaacatat
gtccagtttgtccagacacacagaccctctggagagtacatgtttgagtttgttgaggat
gagcagttctatgtggatctggataagaaggagaccatctggcatctgccagagtttatt
catgccttcaactttgatgcttggaggggtattgctgacattgtcacagcaaagaagaac
ctgaacactctgatccaacggtccaaccacaccagggccacaaatgagccacctgaggtg
gccgtgtttcccaaggagcctgtggagcttggacagcccaacaccctcatctgccatgtg
gacaagttcttcccgcctgtgctcaatgtcacatggctgtgcaatgggcagacggtcacc
aaaggtgtggctgagagcatcttcctgcctagcacagaattcaggttccacaagttccac
tacctgaccttcattcccacggctgaagatgtctatgactgcaaggtggagcactggggc
ctggaccagccgctccttcagcactgggaggcccaggagcctatcgaggtgcctgagaca
atggagactgtggtctgtgccctgggcctggtggtgggcgtggcgggcatcatcactggc
accatcatcctgaagaccaggaggcccgaccatccctgggtgcaggggcccctgtga

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