Leptodesmis sichuanensis: KIK02_02085
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Entry
KIK02_02085 CDS
T07779
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lsc
Leptodesmis sichuanensis
Pathway
lsc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIK02_02085 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsc03021
]
KIK02_02085 (rpoB)
03400 DNA repair and recombination proteins [BR:
lsc03400
]
KIK02_02085 (rpoB)
Enzymes [BR:
lsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIK02_02085 (rpoB)
Transcription machinery [BR:
lsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIK02_02085 (rpoB)
DNA repair and recombination proteins [BR:
lsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIK02_02085 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UIE38470
LinkDB
All DBs
Position
complement(415024..418335)
Genome browser
AA seq
1103 aa
AA seq
DB search
MTDYITPAFTLPDLVEIQRESFRWFLKEGLIEELDSFSPITDYTGKLELHFIGKDFKLKR
PKYDVDEAKRRDSTYAVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAERV
IVNQIVRSPGVYYKSETDKNGRRTYNASLIPNRGAWLKFETDKNDLVWVRIDKTRKLSAQ
VLLKALGLTDGEIFDALRHPEYFQKTIEKEGQYGEEEALMELYRKLRPGEPPTVSGGQQL
LDSRFFDPKRYDLGKVGRYKLNRKLRLNVPEATRVLTPQDILAAIDYLINLEFDIGNIDD
IDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDADALTPASLVNPKPLVAAIKE
FFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETP
EGPNAGLIGSLATHARVNAYGFIETPFYKVENGRVAKDVAPVYMTADEEDDLRVAPGDIP
MDAEGNILGEQVPVRYRQDFTTTTPDEVDYVAVSPVQIISVATSLIPFLEHDDANRALMG
SNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIISRTDGEVTFVSADRIRVRDPQGREI
EYQLQKYQRSNQDTCLNQRPIVFIGDRVVAGQVLADGSATQEGELALGQNILVVYMPWEG
YNYEDAILISERLVYDDVYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLDETG
IIRIGAWVEQGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVV
DVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMPYLP
DGTPVDIVLNPLGVPSRMNVGQVYECLLGWAAQNLNVRFKVVPFDEMHGEEKSRETVHSK
LEDAANMRDEDTQRSKYWLFNPDDPGKIQVFDGRTGEPFDRAVTVGMAYMLKLVHLVDDK
IHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRN
EALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDVAVHKLDTREDGTSRDSEVDLMADVN
TRRAPSRPTYESISRDELDEGEE
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgactgactacattacacccgctttcacccttccggatctagtggaaattcagcgggag
agtttccgctggttcttaaaagaaggtttgatcgaggaactagatagtttctctcccatt
acagactacaccgggaaactggagcttcacttcattggtaaagacttcaagctcaagcgg
cccaaatacgatgttgacgaagccaagcggcgggatagtacctatgccgtacaaatgtat
gtgcccacccggttaattaataaagagacgggggaaatcaaggagcaagaggtgttcatc
ggggatctgcccctgatgaccgatcgcggcacctttattattaacggagcagaacgggtg
atcgtcaaccagatcgtccgtagtcccggtgtctactacaagtccgaaactgacaagaac
ggtcgtcgaacctacaacgccagcctgatcccaaaccgaggagcctggttgaagtttgaa
accgataagaacgatctggtttgggtgcggatcgataaaacccgtaagctgtcagcgcag
gtgctgctgaaagccctgggcctgactgatggggaaatttttgatgccctgcgccaccct
gagtacttccagaagacgatcgagaaggaagggcagtatggcgaagaagaagccctgatg
gagttgtatcgcaagctgcgtccaggtgaaccgccgacggtatccggagggcaacaactg
ctggattctcgcttcttcgatcccaagcgctacgacctgggtaaggtgggtcgctataag
ctgaaccggaaactgcggttgaatgttccagaggcgactcgcgtgttgacccctcaagac
attctggcggcgatcgattacctgattaacctggaatttgatattggtaatatcgatgac
atcgaccatctggggaatcggcgggtgcgctcagttggcgaattgctgcaaaatcaggtg
cgggtcggtctgaatcggttagagcggatcattcgggaacggatgacagtttccgatgcc
gatgccctgactccggcctcgctggttaaccccaaacccctggtagcagccattaaagag
ttctttggctcctcccagttgtctcagttcatggatcaaaccaatccgctggctgagttg
acccacaaacggcggttgagtgcccttggccccggtggtctgacacgggaacgggccggt
tttgcagtgcgcgatattcatccctcccactacggacggatctgcccgattgaaacgccg
gaaggtccgaatgctgggctgatcggctctctggcgacccacgctcgcgtgaatgcctat
gggttcatcgaaacccccttctataaagttgagaatggtcgggttgccaaggatgtagct
cccgtttatatgactgcagacgaagaagacgatctgcgcgtagctccgggtgacattccg
atggatgcggagggcaatattctgggtgagcaggtgcctgtccgctaccgtcaggacttc
accacaaccacaccggatgaagtggattatgtggctgtttctcccgtacaaatcatttcc
gtcgcgacatcgttgattccatttctggaacacgatgatgcgaaccgggcgttgatgggt
tccaatatgcaacggcaggccgtaccgctgctacgtccagagcggcctttggtgggaaca
gggctggaagctcaggcagcacgagattccgggatggtgatcatcagtcgcaccgatggc
gaagttacctttgtttcggcagaccggattcgggtacgtgatccccagggacgggaaatt
gagtaccagttacagaaatatcagcgatcaaaccaggatacctgtttgaaccaacgcccg
atcgtgtttattggcgatcgtgtggtggccggacaggtgctggcggatggttctgctacc
caggaaggggaactggccctgggtcagaacattctggtggtctatatgccctgggaaggc
tacaactacgaggacgcaatcctgatcagcgaacgcctggtttacgacgatgtgtacacc
tcaatccacattgagaagtatgaaattgaagcgcgtcagaccaaacttggccccgaagaa
attacccgagaaattcccaacgtcggggaagatgctctacggcagttagatgaaacgggc
attatccggattggagcctgggtcgaacagggcgacattctggtcggtaaggtaactccc
aagggagaatccgaccaacccccagaagaaaagcttctacgggccatcttcggtgaaaaa
gccagagacgtgcgggataactctctgcgagtgcccaatggtgaaaaaggccgtgtcgtt
gatgtccgggtctttacacgggaacagggggatgaattgccgcccggtgccaacatggtc
gtgcgcgtctatgtggctcagaaacgcaagattcaggtgggcgacaagatggccggtcgt
cacggcaataaggggattatttctcggattctgccgatcgaagatatgccctacctgccc
gacggtactccggttgacattgtgctgaatcccctgggtgtgccttcccggatgaacgtg
ggtcaggtttacgaatgtctgttaggctgggcggcacaaaacttgaatgtccggttcaag
gtggttccctttgatgaaatgcatggggaagaaaaatcccgtgaaaccgtacacagcaag
ctggaagatgctgccaatatgcgggacgaagatacccagcgatcgaagtactggctattc
aatcccgatgatccgggcaagattcaggtcttcgatggacgcacaggcgaacccttcgat
cgcgccgtgacggtcggtatggcctatatgctgaagctagttcacctggtagacgataag
atccacgctcgttccactggcccctactccctggtgactcaacagccgttgggtggtaag
gcgcaacagggtggacagcgctttggggaaatggaagtgtgggcactggaagcctttggt
gccgcctacaccctgcaggaactgctgaccgtcaagtcagacgatatgcagggccggaat
gaagcgctgaatgcgatcgtcaaagggaaagccattccccgacccggtactccagagtcc
ttcaaggtgctgatgcgggagttgcaatccctctgcctggatgtggccgttcacaaactg
gatacccgtgaagacggtaccagccgcgattcggaagtcgatttgatggccgatgtcaat
acccgacgagcgccttctcgtcctacctatgaatcgatctccagagacgaactggatgaa
ggcgaagaatag
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