Litorilituus sediminis: EMK97_04885
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Entry
EMK97_04885 CDS
T05852
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsd
Litorilituus sediminis
Pathway
lsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EMK97_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsd03019
]
EMK97_04885
03009 Ribosome biogenesis [BR:
lsd03009
]
EMK97_04885
Enzymes [BR:
lsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EMK97_04885
Messenger RNA biogenesis [BR:
lsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EMK97_04885
Ribosome biogenesis [BR:
lsd03009
]
Prokaryotic type
rRNA helicases
EMK97_04885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Helicase_RecD
TMIE
Motif
Other DBs
NCBI-ProteinID:
QBG35099
UniProt:
A0A4P6P4S8
LinkDB
All DBs
Position
complement(1079072..1080847)
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AA seq
591 aa
AA seq
DB search
MTDQNNATIGFDTLGLPENLLSALTAIGFTSATAIQSQTIPPLLAGKDVLGEAQTGTGKT
AAFGLPALAQIDTSIRKPQLMVLAPTRELAMQVSEAIESFGKNIKGLRVATLYGGQSYGP
QFQQLERGAQVVVGTPGRLMDHLRRKSLKLDSLSFCVLDEADEMLNMGFLEDIQWILDHL
PETTQMALFSATMPPAIRKIANRFLKDPEHIKIAAVKKAKANINQFAWKVSGINKMTALE
RIAEVVDYDAMIIFVRTRNDTVDVAEKLERAGYPAMALNGDMNQAQRERCIEQMKSGKSS
ILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGTSISFVRPREMYSL
RHYERLTSGKVEMYELPSIQEIGKTRIERTRNEIATIAQEKDIASMREIIEKMAEESELS
MLDLAAALLYQKQLKQPLQPKEDPKPRRESRDRNERGNRDGRRDNRRDARGEGRGNRGEG
RGNDRPRKPKAVRNDVDWQTYRLEVGKDHGARPGDIVGAIANEISLDSSYIGQINLHEKH
SFVQLPKGMPTDSFKRLKGVRVRRQPLAISASDAPIQSQCPPRKDRSQRHN
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaaaacaatgccactattggctttgacactttaggcttgcctgaaaactta
ttatctgcattaacagcaattggctttacgtcggcaactgctattcaatctcaaactatt
ccgccattattagcgggtaaagacgtattaggtgaagctcaaaccggtacaggtaaaact
gctgcttttggtttgccagcattagcgcaaattgatacctcaattcgcaaaccacaatta
atggtgttagcaccaacgcgtgaacttgctatgcaagtatcagaagcaattgaatctttt
ggtaaaaacattaaagggcttcgcgttgctacactctatggtggtcaatcttacggtcca
caatttcaacagttagaacgtggtgcacaagtcgttgttggtacgccagggcgtttaatg
gatcacttacgtcgtaagagcttaaaactagatagcttaagcttttgtgtacttgatgaa
gctgatgaaatgcttaacatgggctttttagaagatattcagtggattctagatcactta
ccagaaacaacacaaatggcattattctcagccactatgccaccagcaattcgcaaaatt
gctaatcgtttcttaaaagatcctgagcatattaaaattgcggcagttaaaaaagccaaa
gcgaatatcaatcagtttgcatggaaagtaagcggtatcaataaaatgaccgcattagag
cgtattgctgaagtggttgattacgatgccatgattatttttgttcgcacacgtaacgat
accgtagatgttgccgagaaattagagcgtgccggttatccggcaatggcgttaaatggt
gatatgaaccaagcgcaacgtgaacgttgtattgagcaaatgaagtcgggtaaatcgtca
attttagtggcaactgatgttgttgctcgtggtttagatatcccacgtatttctttggtt
atcaactacgacttacctggtgacaacgaagcttatgttcaccgtattggccgtacaggt
cgtgcgggtcgtgaaggtacatcaatctcatttgttcgcccaagagaaatgtattcattg
cgtcactacgagcgtttaacctctggtaaggttgaaatgtatgaattgcctagcattcaa
gagataggtaaaacacgtattgaacgcactcgtaatgaaatcgcgactattgcgcaagag
aaagatattgcaagcatgcgcgaaattatcgagaaaatggcagaagagtctgaattatct
atgttagatttggctgctgccttattgtatcaaaagcaattgaagcaaccattacagcca
aaagaagatcctaagccgcgcagagaatctcgtgatcgtaacgagcgcggtaatcgcgat
ggtagaagagataatcgtcgtgatgctcgtggcgaaggtcgtggtaatcgtggtgaaggc
cgtggtaatgatagaccgcgtaagccaaaagcggtacgcaatgatgttgattggcaaaca
tatcgcttagaagtaggtaaagatcacggtgctcgtccaggcgatattgttggcgctatt
gctaatgaaatttcactagacagtagttatatcggtcaaattaacttgcatgaaaaacac
agcttcgtgcagttacctaaaggtatgcctaccgactcatttaagcgtttaaaaggtgtt
cgagttcgtcgtcagccgttagctatttctgcttcagatgcgccgattcaaagtcagtgt
ccacctcgcaaagatcgcagtcaacgtcataattaa
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