Litorilituus sediminis: EMK97_09830
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Entry
EMK97_09830 CDS
T05852
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lsd
Litorilituus sediminis
Pathway
lsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EMK97_09830 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsd03021
]
EMK97_09830 (rpoB)
03400 DNA repair and recombination proteins [BR:
lsd03400
]
EMK97_09830 (rpoB)
Enzymes [BR:
lsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EMK97_09830 (rpoB)
Transcription machinery [BR:
lsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EMK97_09830 (rpoB)
DNA repair and recombination proteins [BR:
lsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EMK97_09830 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Sey1_3HB
Motif
Other DBs
NCBI-ProteinID:
QBG35991
UniProt:
A0A4P6P3L7
LinkDB
All DBs
Position
complement(2209582..2213610)
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYFEKKRIRKDFGKSAQVMDYPFLLSIQLESFSKFIDIDPTGETGLEAAFRSIFPIK
AYSGSSELQYVSYRLGEPLFDVKECQIRGVTYSAPLRVKLRLVVYDKEAPAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYSTEQILDIFYDTTNFEIKGDKLIMD
LIPDRLRGETATFDIKIDKDDILVEQGRRITARHIRALNKAKVDKLEVPAEYIVGRVLSK
AYVDESTGEVIAEANAEITLELLAELSQAGHKVISTLYMNEFDVGSYMSDTLRVDSSTNR
LEALVEIYRMMRPGEPPTKDAAEALFDNLFFSSERYDLSTVGRMKFNRRVGNADDVGEGI
LSNDDIISVMKTLIDIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLDGTMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDYGFLETPYRKVVDGVV
TDEIDYLSAIEEGNFVIAQANAERDENQKLTQDLVNCRHKNEFTLKSSDEVQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGSNMQRQAVPTLKVDKPLVGTGMEKVVAVDSGVTAVAK
RGGVVDYVDASRIVVKVNENEMIPGEAGIDIYNLTKYTRSNQNTCINQRPVCRMGEPVVR
GDVLADGPSTDMGELALGQNMRIAFMPWNGYNFEDSMLLSERVAQEDRFTTIHIQELTCI
ARDTKLGSEEITADIPNVGESALAKLDEAGVVYIGAEVSGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKAADVKDSSLRVPNSVKGTIIDVQIFTRDGVEKDARAIEIEEMQLKEVKKD
LGDELSILEDGIYARTKKLLLSAGLNESDLTSMSRDKWLTQNLSDEAQQAELEQIAEQWD
NIKEDFDKKYEVKRRKITQGDDLQPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISNV
VPVEDMPYDENGVPVDIVLNPLGVPSRMNIGQILETHLGMAARGVGEKINRMLEAQQEIH
KLRNFLQDVYNVGESRQEVDIASFSDEEVLRLADNLRAGLPIATPAFDGAAEKEIKELFK
LADMPESGQFVLTDGRTGRKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNLVDGDHRMEPGIP
ESFNVLLKEIRSLGINIELDQE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatactttgagaagaagcgaattagaaaggactttggtaaaagcgcacaa
gtaatggattatccattcttgttgtccatccaactcgaatcttttagcaagtttattgat
attgatccaacaggtgaaaccggtctagaggctgctttccgttctatttttccaattaaa
gcttattcaggtagctcagagttacaatatgtaagctatcgcttaggcgaaccgttattt
gacgtaaaagaatgtcaaatacgaggtgtaacttattctgcaccgctacgcgttaaatta
cgcttagtggtttacgataaagaagctccggcaggtactgtaaaagatatcaaagagcaa
gaagtttacatgggtgaaatcccgttgatgacagagaacggtacctttgtaattaatggt
actgaacgtgttatcgtttcacaattgcatcgctctcctggtgttttctttgatcacgac
aaaggtaaaacacactcttcaggtaaagtgttatataacgcgcgtgtaattccttaccgt
ggttcatggttagatttcgaatttgatccaaaagataacttgttcgtacgtattgaccgt
cgtcgtaaattacctgcgtcgattatcttacgtgccttagaatattctacagaacaaatt
ttagatattttctacgatacaacgaactttgaaatcaaaggtgataagttgatcatggat
ttaattcctgatcgcttacgtggtgaaacagcaacgtttgatattaagattgataaagat
gatatcttagttgaacaaggtcgtcgtattacggctcgtcatattcgtgctttaaacaaa
gcgaaagtagataagctagaagtaccggctgagtatattgttggtcgcgtattatcaaaa
gcttacgttgatgaatcaacaggtgaagtgattgctgaagcaaatgctgaaatcacctta
gagcttttagctgagttaagccaagcaggccataaagttatttctacactttacatgaat
gaattcgatgtcggttcatacatgtctgatactttacgtgtagatagttcaactaaccgc
cttgaagcattagttgaaatttaccgtatgatgcgtcctggtgagccaccaacaaaagat
gctgctgaagccttatttgataacttattcttctcatcagagcgttatgacttatcaaca
gtaggtcgtatgaagttcaaccgtcgtgttggtaacgctgatgatgtcggtgaaggtatc
ttatctaacgacgatattatttctgtaatgaaaacccttatcgatattcgtgacggtaaa
ggtgaagtggatgatatcgatcacttaggtaaccgtcgtattcgctctgtgggtgaaatg
gcagaaaaccaattccgtgtgggtctagttcgtgttgagcgtgctgtacgtgagcgttta
agtctgggtgatttagacggcactatgccacaagatttaatcaatgctaagcctatctct
gcggcagttaaagagttctttggctcttctcaattgtcacagtttatggaccaaaacaac
ccgttatcagaagtaacgcacaagcgtcgtatctctgcattaggcccaggtggtttaacg
cgtgaacgtgctggtttcgaggttcgagatgttcatccaacgcactacggtcgtgtatgt
cctatcgaaacacctgaaggtccaaacatcggtttgatcaactcactttcttgttatgca
agaactaacgactatggtttcttagaaacaccataccgtaaagtggttgatggtgtagtg
accgatgaaattgattacttatcagcgattgaagagggtaactttgttatcgctcaggca
aacgctgaacgtgatgaaaatcaaaagttaacgcaagacttagttaactgtcgtcacaaa
aatgaatttacactgaaatcttctgatgaagttcagtatatggatgtatctccacagcaa
attatttctgtggcagcatcacttattccattcctagaacacgatgatgctaaccgtgcc
ttaatgggctcgaacatgcaacgtcaagctgtacctacattgaaagtggacaagccactt
gttggtactggtatggaaaaagtagtagcggtagactcaggtgttacagctgttgctaaa
cgtggtggtgtcgttgattacgttgatgcatcacgtatcgtagttaaagtaaatgaaaat
gaaatgatcccaggtgaagcgggtatcgacatttacaacttaactaaatacacacgttct
aaccaaaacacttgtatcaaccagcgtccagtgtgtcgtatgggtgaaccagtagttcgt
ggcgatgtattagccgatggtccttcaaccgatatgggtgaattagcattaggtcaaaac
atgcgtatcgctttcatgccgtggaatggttacaactttgaggattcaatgttgttatct
gagcgtgtagcacaagaagatcgctttactacaattcatatccaagaattaacctgtatt
gctcgtgatactaagctaggtagtgaagaaatcactgctgatattcctaatgttggtgaa
tctgcattagctaagcttgatgaagcgggtgttgtatacataggtgctgaagttagcggt
ggtgatatcttagtaggtaaagtaacacctaaaggtgaaacgcaacttacaccagaagaa
aaactactacgtgcaattttcggtgagaaagcagctgacgttaaagatagctcgttacgt
gtacctaactcagttaaaggtactatcatcgatgtacaaatcttcacacgtgatggcgta
gaaaaagatgctcgagcaatcgaaatcgaagaaatgcaacttaaagaagttaagaaagat
cttggcgatgaattaagcattttagaagatggcatctatgcacgtactaagaagttatta
ctatcagctggtttaaatgaatcagatttaacgtctatgtctcgtgataagtggttaacg
cagaacttatctgacgaagcacagcaagctgaattagagcaaattgctgagcagtgggat
aacatcaaagaagactttgataagaaatacgaagtcaagcgtcgtaagatcactcaaggt
gatgacttacaaccgggcgtattgaagattgttaaagtttacttagcggttaaacgtcgt
attcagccgggtgataagatggctggtcgtcacggtaacaagggtgttatctctaacgta
gtaccagtagaagatatgccgtacgatgaaaacggcgtacctgttgatatcgtgttgaac
ccgctaggtgtaccatcacgtatgaacataggtcagatcttagaaactcacttaggtatg
gcggcacgtggtgttggtgagaaaattaaccgtatgttagaagctcaacaagagattcat
aagctacgtaacttcttacaagacgtatacaacgtgggtgagtctcgccaagaagttgat
atcgcaagcttctctgatgaagaagtactgcgtttagcagacaatttacgtgctggttta
cctattgcaacacctgcatttgatggtgcggcagagaaagaaattaaagagctatttaag
cttgctgatatgccagaaagtggtcagttcgtattaactgacggtcgtactggtcgcaag
tttgaacgtccagtaacggtaggttacatgtacatgctgaaactaaaccacttagttgat
gacaagatgcatgcccgttcaactggttcttatagcttggttactcagcaaccacttggt
ggtaaagctcagtttggtggccagcgtttcggtgagatggaagtatgggcacttgaagca
tacggtgctgcatataccttacaagaaatgttaacggttaagtctgatgatgttaacggt
cgtactaagatgtataagaacttagttgacggtgaccacagaatggagccaggtatccct
gagtcattcaacgtattgttgaaagaaattcgttcgttaggtattaacatcgaactagat
caggaatag
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