Ligilactobacillus salivarius CECT 5713: HN6_00931
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Entry
HN6_00931 CDS
T01962
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lsi
Ligilactobacillus salivarius CECT 5713
Pathway
lsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HN6_00931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsi03019
]
HN6_00931
Messenger RNA biogenesis [BR:
lsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HN6_00931
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_2
KH_NusA_2nd
DUF7262
Motif
Other DBs
NCBI-ProteinID:
ADJ79206
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Position
complement(1160595..1162160)
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AA seq
521 aa
AA seq
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MIIAITILAIAIATLVIGFALGVAYRKRSYEQALDVATQTATGIIETAKKEAAASKKEAI
IEAKEENHRYRSEIESELKERRSEIQRQENRLLQREEILDRKDTALDKREDVLEKKEAQL
DSDQKVVTKQKEQASLLVKEQQDKLEEIAALTRPEAKELILNETKEELIHERAVMIKESE
EETKATVDRKAKSLIAQAIQRSAADMVSETTVSVVNLPNDEMKGRIIGREGRNIRTLETL
TGIDLIIDDTPEAVVLSGFDPVRREIAKMALERLIQDGRIHPARIEEMVDKATKDMDAKI
REIGEEVIFDLGIHSMHPDLIKTIGRLNYRTSYGQNVLNHSIEVAKISGILAAELGEDVI
LAKRAGLLHDIGKAVDHEIEGSHVELGVELTKKYNESETVVNTIASHHGDTEPKSVIAVL
VAAADAISAARPGARSESLENYIHRLEKLENISNEFKGVQKSYAIQAGREVRVIVQPNEV
SDLEATVLARDIRMKIEDELEYPGHIKVTVIRETRAVEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
gtgattatagcaattacaatcctcgccatcgccattgcgactttagttatcggttttgcg
ttgggggtagcttatcgtaagcgtagttatgaacaagctttagatgtagcgacacaaaca
gcaactggtatcattgaaacagcaaaaaaagaagctgctgcaagtaagaaggaagcgatt
attgaagctaaagaagaaaatcatcgttaccgttctgaaatagaaagtgaactaaaggaa
cgcagatctgaaattcaacgtcaggaaaatcgcttgttacaaagagaagaaattctcgat
agaaaagatactgctttagataaacgtgaggacgttttagagaaaaaagaagcacaatta
gattctgatcaaaaagttgtaactaagcaaaaagaacaagcatctttgttagtaaaagag
caacaagataaacttgaagaaattgcagcattgacaagacccgaagctaaggaattaatc
ttgaatgaaactaaggaagaattaattcacgagcgtgcggtaatgattaaggaaagtgaa
gaagaaactaaagctacagttgaccgaaaagctaagagtttaatcgcccaagctattcaa
cgtagtgctgcagatatggtatctgaaacaactgtgtctgtagtaaatcttccaaatgat
gagatgaagggtagaataattgggcgtgaaggtcgaaatattcgtactctagaaacattg
actggaattgacttaataatcgatgatacgccagaagcagtcgttttgagtggtttcgat
ccagttagaagagaaattgctaaaatggccttagaaagattaattcaggatggccgaatt
catccagcaagaattgaagaaatggttgataaggctactaaagatatggatgcaaaaatt
cgtgaaataggtgaagaagttatttttgacctaggaattcattcaatgcacccagacttg
attaagactattggtagattaaattatcgtacaagttatggtcaaaatgttttgaatcat
tcaattgaagttgcaaaaatttcaggaatactagctgctgaattaggcgaagatgtcata
ttggcgaaacgtgcaggattattacacgatattggtaaagctgttgatcatgagattgag
ggttcacatgtcgaacttggtgtagaactcactaagaaatataatgagagtgagacagtt
gtcaatacaattgcttcgcatcatggagacacagagcctaaatccgtaatagctgtttta
gttgctgcggctgatgcaatttcagctgctagaccaggtgctcgtagtgaatcattagaa
aattatatccatcgtcttgaaaaattggaaaatatttcaaacgaatttaagggtgttcaa
aagagttacgctattcaagctggtcgggaagtcagggtcattgttcaaccaaatgaggtt
agtgatttagaggcaactgttttggctagagatattcgaatgaagattgaagatgagtta
gagtatccaggtcatattaaagtgacagttattagagaaacaagagctgttgaatatgct
aagtaa
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