Leptothermofonsia sichuanensis: J5X98_23180
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Entry
J5X98_23180 CDS
T07904
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsk
Leptothermofonsia sichuanensis
Pathway
lsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X98_23180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsk03019
]
J5X98_23180
03009 Ribosome biogenesis [BR:
lsk03009
]
J5X98_23180
Enzymes [BR:
lsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5X98_23180
Messenger RNA biogenesis [BR:
lsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5X98_23180
Ribosome biogenesis [BR:
lsk03009
]
Prokaryotic type
rRNA helicases
J5X98_23180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
QZZ20144
LinkDB
All DBs
Position
complement(5372515..5373933)
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AA seq
472 aa
AA seq
DB search
MTLSFHSLGISEHRARHLESIGFTNPTEIQSQAIPHLLSGRDVVGQAQTGTGKTAAFSLP
ILERIDVKMPVVQALILTPTRELALQVCQAIRTFVDDRRLRVVTIYGGQAIETQVSRLQR
GAQIVVGTPGRVLDLLGRGDLKLNNLNWLVLDEADEMLNMGFIQDVEKILNQVPIERQTA
FFSATMDPSIRKLVTKFLRSPITITIEQPKAAPTRINQVAYMVPRGWTKSRALLPILELE
DPESALIFVRTRKAAAELTSQLQAAGHSVDEYHGDLSQTQRERLLLRFRQRQVRWVVATD
IAARGIHVDDLTHVINYDLPDSVENYVHRIGRTGRAGKEGTAISIIHPLDRRKLRDIEYH
VRQRLEIASIPTRAQIEARQLEKLQTQVREALTGERMASFLPIVAQLSEEYEPHAIAAAA
LQMAYDQTRPAWMRSNHDPIEDAPPVDAPKPKPIKRVKPAESKGRVSPTRDR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttcgtttcatagcctcggaatttccgaacaccgtgctcgtcacctggaatcc
attggcttcaccaatccgactgagatccaatcccaggcgatcccccatctgctctctgga
cgagatgtggtgggtcaggcacagacgggaaccggcaaaaccgctgctttctcgctcccc
attctggagcggattgatgtcaaaatgccggttgtccaggcattgattttgacccccacc
cgtgaactagcactccaggtctgtcaggcaattcgcacctttgtggatgatcggcggctg
cgtgtcgtcacgatctatggaggacaggcgattgaaacccaggtatcccgcctccaacgg
ggtgcccagattgttgttggcacacccggtcgagttcttgatttactcggtcgcggtgac
ctgaagttgaacaacctcaactggctggtgttggatgaagccgatgagatgctcaatatg
ggctttatccaggacgtggagaagattctgaaccaggtgccaattgagcggcagacggct
ttcttctctgccacgatggatccgtcgattcgcaagctggtgaccaagtttttgcgatcg
cccattaccatcaccattgaacaaccaaaagcggctcccacccggattaaccaggtagcc
tacatggtgccccgtggttggaccaaatcccgtgctctgttgcctattctggaactggaa
gatccggagtcagcgctgatctttgtccgtacccgcaaagcggcagcggaactgaccagc
cagcttcaagccgccggacatagcgtggatgagtaccacggggatctgagtcaaactcag
cgggaacggttgttgctgcggttccgccagcgccaggtccgttgggtggtggcaacggat
attgccgctcgtggaatccatgtggatgacctgacccatgtgatcaactatgatctgccc
gacagtgtggaaaactacgttcaccggattggacggacgggccgggccgggaaggaagga
acagccatttcgatcattcatcctctggatcggcgcaaactgcgggatattgagtaccat
gtccgtcagcgcctggaaattgcttcgattccgacccgtgctcaaattgaagcccgccag
ctagagaagctacaaactcaggtgagggaagcattgaccggcgaacggatggcgtctttc
ctgcccattgtggcacagttgtcagaagagtatgagccacacgcgatcgcagccgccgca
ttacaaatggcctatgaccagacccgtcctgcctggatgcgctctaaccatgacccgatt
gaggatgcaccgcccgtggatgctcccaaacccaaaccaatcaagcgggtgaaacctgcc
gaatctaaaggacgagtttcccctacccgcgatcggtaa
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