Lepeophtheirus salmonis (salmon louse): 121116903
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Entry
121116903 CDS
T08214
Name
(RefSeq) transient receptor potential protein isoform X1
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsm04040
]
121116903
Ion channels [BR:
lsm04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121116903
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_3
Ank
Ank_5
Ank_KRIT1
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121116903
NCBI-ProteinID:
XP_040567143
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All DBs
Position
4:complement(15614327..15634365)
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AA seq
1055 aa
AA seq
DB search
MSNRITSANSVTSNSTRNRAPSFKKSSRMNSHEFETVRPDQRILTPDEKMFLLNVERGDT
AMVKRIITAFSNKKTIFDLNCVDPLGRSGLAIAIENENLEMINALLENKIEPRDSLLVAI
REDYVEGVEILLEWEEENHKPETLYSWESVDQVTANFTPDITPLILAAQRNNYEILKLLL
DRGATIPMPHDIKCSCDICVSSHSDDSLRFSLSRINSYKALSSPSLIALSSKDPILTAFE
LGNELKKLSALETEFRQEYSDLRVQIQTLATGLVNHARTSYELEVLLNHSPDGVPWTPGK
PQTLERLKLAIDVNQKDFVAHPSVQQLLGAIWYQALPGFRRLHFIKQILVCLKVACMFPV
YSTMYMLAPGSTLGKFAKSPFIKFILQSASYMFFLFLLALCSQRVEYIVIDILVFAVPGL
EWLADIKADWIKHERGSLPSIIELAIIGYIQGLVWQSLKVLWKKGLLDFCLDLWNLADVF
SYGSFMGWIGMRSLAFLLVQREKWNEVPVEEIWIPREEWHVFSPMLLADGLFSAGMISAY
LKIIQIFSINPYLGPLQVSLGKMIIDIAKWLVLYILVLFSFGCGLNQLLWYYSDLEKQKC
YSLPGGLPDFENFGDSCVTWRRFFNLWETSQSLFWASFGLVELGDFELSGVKEFTRFWAL
LMFGSYSVCNIIVLLNMLIAMMSNSYTAIAERSDTEWKFARSRLWISYFDEGSTVPPPFN
IIPTAKSMKKLFTCLYCKGKQAEKVDSRQRKAADNRYYGVVRCLVKRYITEEQRKSQDFN
VTEDDINEVRQDIRSFRYDLINILKENNMKTPTVREENVIGRKSKDLERMIAKGFNMAKV
EGVMSNMFEKVIQTSKPTDIFKKLARVAIKKKVPKLGSAQQSFDSSNPIGSKAASLKRRN
TSLKRSLLIRGNSREDIEKNLLRDTNSLLSYNPRLKDVSPAMRIAWAKFKGGFDDVLYEK
EEELSPPPSPRVKAEVNIINEGSKTTTENNKVQATTQKAEPNNEKPVAPENIPTTSSSIS
PQKKEPGVNSSRKEIIRGRIDGKGGSHSCFEFYFA
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcgaataacctcagctaactccgtgacttcgaattcgactcgaaatagggct
ccttcttttaagaagtcctctcgaatgaatagtcatgaattcgaaaccgttcgtcccgat
caacgcattctcactccagatgaaaagatgtttcttctcaatgttgaacgtggagacacg
gctatggtcaaacgaataatcacagcattctccaacaagaagaccatatttgatttaaat
tgtgtagacccccttggacgaagtggtcttgccatagcaattgaaaatgaaaacttggaa
atgattaatgcacttttggaaaacaaaattgaaccaagagattctttattagtcgccatt
cgtgaagactatgtcgaaggagtggagatacttttagaatgggaagaagaaaatcataaa
ccagaaacgctctactcgtgggaatctgtggatcaggtcactgcaaactttactcctgac
attacacctcttattcttgcagctcaacggaataactacgaaattctaaagcttttactg
gatcgaggagcaacaatacccatgccgcatgatatcaaatgtagttgtgatatttgcgtc
agcagtcattccgatgattccctcaggttttctctctcaagaataaattcatacaaagct
ctatcaagtccgtcactcattgcactgagttctaaagatcccattctcacagcatttgaa
cttgggaatgagctgaaaaagctgagtgcgttggaaacagagtttcgacaagagtattct
gacttgagagtacaaattcaaaccttagcaacaggacttgtgaatcatgcaagaaccagt
tatgaattggaagttttgttaaatcatagtccagatggagttccttggacgccagggaaa
ccgcagacacttgaaagacttaaacttgctattgatgtgaatcaaaaagattttgtggct
catcccagtgttcaacagctattaggagctatttggtatcaagcacttcctggatttcgt
cgacttcactttataaagcaaatccttgtttgtttaaaagttgcatgcatgtttcctgta
tactcaactatgtatatgctagctccgggctcaacgttaggaaaatttgccaaatctcct
tttattaaatttatccttcaatctgctagctacatgttctttttatttctgttggctctt
tgttctcaaagagtggaatacatcgtcattgatatattggtttttgcggttcctggattg
gagtggctcgctgatataaaagctgattggataaagcacgaaagaggatctcttccaagt
attatagaacttgctatcataggctatatacaaggactcgtttggcagtccttaaaagtc
ctgtggaagaaaggtttattggatttttgtttggatctctggaatttagcagatgttttt
agttatggatcatttatgggttggataggaatgagaagtttggcgtttttgttagttcaa
agagaaaagtggaatgaagttcccgtagaggaaatttggattccacgagaagaatggcac
gtgttctccccaatgctgttggcagacggattgtttagtgcgggaatgatctcagcttat
ctgaaaatcattcaaatttttagtatcaatccatatcttggacctctacaggtgtcttta
gggaaaatgataattgatattgcaaaatggttagttctctacatattagtcctattctcc
tttggatgtggtttaaatcagcttctttggtattactcagatttagaaaaacagaaatgc
tatagtcttccaggaggacttcccgactttgaaaattttggagattcctgtgtaacttgg
agacgattttttaatctttgggaaacgtcacagtccttattctgggcgagctttggtttg
gtcgaactcggggattttgaattatctggagtgaaagaatttactcgattttgggcttta
ctgatgtttggaagttactctgtttgtaatatcattgttctcttgaacatgctcattgct
atgatgtctaattcttacactgccattgctgagagatctgacactgaatggaaatttgca
agaagtcgcctatggatttcttactttgatgaaggatccaccgttccaccgccatttaat
ataattccaactgccaaatccatgaagaagttgtttacttgtttgtattgtaaaggtaaa
caagctgaaaaagtagattcaaggcaacgtaaagcagcagataataggtactacggtgtg
gtaagatgtcttgtcaaaagatatatcacagaagagcaaagaaaatctcaggattttaat
gtgacggaggatgatatcaatgaggttcgtcaggatattcgatcatttcgttatgatctc
attaatattttgaaagagaacaacatgaaaactccaacagttcgtgaagaaaatgtaatt
ggacgtaaatcaaaggacttggaaagaatgatagctaagggctttaatatggccaaagta
gagggtgtcatgtcaaatatgtttgagaaggtaattcagacttctaagcccacagatata
ttcaaaaagttagcaagagttgcaattaaaaaaaaagtgcccaaacttggaagtgctcag
caatcttttgattcctccaatccaattggcagtaaagcagcatcacttaagagaagaaat
acttcacttaagcgctcacttttgattagaggtaactcccgcgaagatattgagaaaaac
ctactgagggatacgaattcattgctgagttataatccaagactcaaggatgtgtcccca
gctatgagaatcgcttgggccaagtttaaaggaggttttgatgatgttttatatgagaaa
gaagaggaattatcaccacccccttcgcctcgtgtcaaggcggaagtcaatattattaat
gaaggatcaaaaactactactgaaaataataaggtccaggccacaactcaaaaggcagag
ccaaataatgaaaagccagtagctccggagaatataccgactacatcatcctcaatcagt
ccacaaaaaaaagagccaggagtcaacagttccagaaaagaaatcatcagaggtcgtatc
gatggaaaaggagggtcccactcctgctttgagttctacttcgcctaa
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