Lepeophtheirus salmonis (salmon louse): 121117068
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Entry
121117068 CDS
T08214
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121117068 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121117068 (Not1)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121117068 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121117068 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
121117068
NCBI-ProteinID:
XP_040567300
LinkDB
All DBs
Position
5:57377420..57385866
Genome browser
AA seq
2528 aa
AA seq
DB search
MNLESLSFALSQISYLIASLTKKNYKSSTSECLSLISTFGPEAERHLFRCLFSRVDFSLE
NKPPISQELQFLISKVDDLLSSQSHFVSVLCFSLDNPLHHQKTLRPSPDLLSNLSLNLRL
SPIKDILFSLALTHSSILEIKALAQSFFIKKFSEYANNNLASDSKVDNDTDINSLSEGIN
YILTTIYENEDYKALRVDGSLDKFINYLNQEYCSSDAEAPTALLPFLDLNHQDPDPSLLA
AAISEITMASKGLLDGSIPDVIRELGYQFTSNSEHCRDMLQKLCRGQEIHAQMVARIIGV
MVRTHSGLDEGVNTSSNANNIWDKDKGAGEPTSWNMDVFIKVVNELQPTLHWKEIIYELD
HPGFLVPDRQGLMLLIKALRLGLQAQGFQGPFPFEMFYRHWKNTEGQVSLFQHCLQNPEI
FSLADHHHHSAAFEVLKVPPDLQSREVSSWVSLELVDALLYLAEHGQSHIVTELFKFPQT
HCPDVLALSLLQLNTPITPLRRDLLTVLFQIFLANHPNSLVILAHAWNMPAFKVIVIQAM
DEYYRKAAEEGDCEHSRLSRILDVAQDLKALSVMLNAQPIPFIIDLAVLASRREYLKLEK
WLTDQMMDHGEASVKAVVQYLQRKIPAIMGSVPVKEEYVLKSNIPLDALPIILMCLQQII
TNGARIQMDLRETIITMVSNCQGILSRRQSQQQPPVPPPVVLRPPSRSTLESSGTGGFGS
GNSTLNNTTSSNGCPIRTTPRLPSNSMFPVHDPIAGISSQFPGGLNLNAPTSSSAISLGP
LVSGPGSPSRIFGNPTTSVESSSQFGGIMPQPPPHHHISATVSNSTTAVGTTGAGTSMPS
GMQSGIEQLRQGNIANLLPDMCGPVSKEIEDETNSYFQRIYNRPPYPTLSIDEVLDLLKK
FQDSPNQRERSLFNCMIKNLFEEYQFFYQYPDAELHITSQLFGGIIERGLVPTIPLGIAL
RYVLEALRKRLDSNLYIFGITALDRFKTRLKDYPQYCQHISCIPHFKDFPPHLIEWVEFG
SQSLVPPGEPQAPDGSFRPSSQRRSTEIETLPTQTTTLQVAKTTVTVTSTTSSSTTIVRP
SISTVGGRPSIANTTNIDTLINARQATGHSELVVPSVDIQDKIAFIFNNLSLMNMQQKAA
DLREQLKDDIYTVWLAQYLVMKRASIEPNFHNVYSSFLEVLCMNSLYDDVIIETYHNIRI
LLRSDKVQFSCSDRTLLKNLGHWLGLMTLARNRPILTIELDTKPLIIEAYHNGQHELFYI
VPFIAKVMESCARSRVFKPPCPWTMGIMNLLAELHQEHDLKLNLKFEIEVLCKTLNLDLN
TLSPGNLLKDYDRLHKILNVKNFSLQHHQTSIQSHHPAALAKPGGAEPSFVMPTGHKLEH
GGVMHGGNVTSSSNIGAFNTPVTSVQPGSAGAGMGAALVATPIISLTGSAALMGGMGMQG
QNPRLYDTSHPESLAGPPQTNEPMTPPVIQQQPASSNNTVTPATLVRQSEPKFHFTDINT
SNLNGIVPHISIDSRLTLLRDQPDLVQLIKLAIEKSIQEWASPVIDRAIKIALTTCEQIV
KKDCALDHDENRLRHSAHYMVRNLTAGMAMITCRDHLLLSIKTHLKNFMITLGRNLTPNQ
TEAIEMTVSVIANDNVELACAFIQKKAIEKAIPEIDKRLKGEYDNRILARKEGRRHWDGA
ALAYQAERMPEMIRLKVGAVSQQQNAVYEEFAHNIPGFKPLTDREILAIAPKPLVDPGPV
VLSSSSNTMAPSEDCIAILDEVFSKLEPFVANCTGLPTTPHMANLHALVQNLAVTRSSKE
VNTISLLIHKAVEGLLEGLTPNLPVETENLARYRDANLLVLRALSDPRAFGANWTSRQVT
LALIEAREELKYNLDAVDILIRSGFVSLLDYDKHLSQAMQGGENVIATAFAMHLCKIYLI
DDRSNAHIIESDLFGTIETLQKISTNSPRPPDGIISLMEMIKMSSERLEQNLAMAGPTGQ
LHSGIQQAREFGDPRGLLEKTEFLLREWVNAYHSRDAGKDSRQAFFIFVKRMNEHGILKT
DDLITRFFRMSTQMCVDLCYRALAEQNNSPTLVRAKCFHTLDAYVRLITLLVKHSGETQN
TVTKVNLLNKVLGIVAGVLLIDHDVRNTGFQQVPYHRIFIMLFLELNTPDHILATINFQV
LMAYSNMLHLLRPAKAPGFAYAWLEIVSHRVFMQQVLVNSPQAKSWPMYAQLLADLFKFL
APFLRNAELAKPVHRLFRGTQRVLLVLLHDFPDFLSDYHYTFCDVIPPNCIQMRNLILSA
FPRSMRLPDPFMPNLKVDMLPEISIAPRMCANYSAMLKPSFKKELDSYLKNRGPVSFLVE
VRSHLVINGSGGESGGNGTNCSNRYNIQMINALVMHVGISAINYIRSKQLAPNMATIAHS
SHMDIFQNLAVDLETEGRYLFLNCIANQLRYPNSHTHYFSCTLLYLFAEANTQAIQEQIT
RVLLERLIVNRPHPWGLLITFIELIKNPTYKFWTHDFVHCAPEIRKLFESVARSCMVPSL
PRDNGDNE
NT seq
7587 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagagtctctatccttcgctctatctcagatcagttatttgattgcgagtttg
acgaagaaaaactacaagagtagcacaagcgagtgcctttccttaatatccacgttcggg
cccgaggctgagagacatttattccgctgtctcttttctcgagtcgatttctctcttgaa
aataagcctccgatttctcaagagttgcaatttcttataagtaaagttgacgacctactt
agttctcaaagtcactttgtctccgttttgtgcttctctctggataatccattgcatcat
caaaagacattgaggccttcgcctgatttactatccaatttatcattgaatcttcgattg
tcgccaattaaagatattttattctccttggccttaactcattcctctattttggaaatt
aaagccttagcgcaatccttctttataaagaaattttcagagtacgctaacaataactta
gcgtctgactcaaaggttgataacgacacagacatcaattcactgtctgaaggtattaat
tatatattgacaacgatttatgaaaacgaagattataaggctctaagagtagacggatca
ttggacaagtttataaattacttaaatcaagagtattgttcttcagacgcagaagctcct
actgctttattaccctttctggacttgaatcatcaagaccctgatccatctctattagct
gctgcaatcagtgaaatcacaatggcgtctaagggtcttttagatggatctatcccagat
gtcattcgagaattggggtatcagttcactagtaacagtgagcattgcagagatatgttg
caaaaactctgtagaggtcaagaaatacatgcgcaaatggttgctcgtataattggcgtc
atggtaaggactcattctgggctggatgagggagtgaatacttcatctaacgcaaataat
atttgggacaaagataaaggtgctggtgagccgacctcctggaacatggatgtttttatt
aaagttgtaaatgaattacaacctacgttacactggaaagaaatcatttatgagttagat
catccaggtttccttgtgccagataggcaaggtctcatgcttttgataaaagctttgaga
ttaggtctccaagctcagggatttcaaggaccttttccttttgaaatgttttatagacat
tggaaaaacacagaaggtcaagttagtcttttccaacattgccttcaaaacccagagatt
ttctctcttgcggatcatcatcatcattctgcagcttttgaagtattaaaagtacctcca
gacttgcaaagtcgagaagtttcatcttgggtttctttggaacttgtcgatgcccttctc
tacttggctgaacatggacaatcccatattgtgacagaattgttcaaatttcctcaaaca
cattgtcctgatgtcttggctctctcattgttacaactaaatacccctattacacctttg
cgtagggatttacttacagtcctgtttcagatatttttggcaaatcatcctaattcatta
gtcatacttgcgcatgcgtggaacatgccagcttttaaagtgatagttattcaagcgatg
gacgagtattatcgtaaagctgccgaagaaggtgattgcgagcattctcgactttcccgt
attctggacgtggcacaagaccttaaagcgctatctgtgatgcttaatgctcaacccata
ccttttatcatcgatctagctgtacttgcatcaaggagagaatatttaaaactcgaaaag
tggttgacggatcagatgatggaccacggtgaagcttctgtgaaggccgtcgttcaatat
ttgcaaagaaaaattccagctataatgggatctgttcctgtgaaagaagaatatgttctt
aaaagtaatattccgttagatgctctccccatcattttaatgtgtcttcaacaaatcatt
accaatggcgctagaatacaaatggatctgagagaaacaattataactatggtctcaaat
tgtcagggtatattaagtagaagacaatctcaacaacagcctcctgtacctccaccagtc
gtactgagacctccttcaagatcaaccttggagtctagtgggacaggcggttttggtagt
ggaaattcaactttaaataacacaacatcgtcaaatggttgtcctatacgtaccactcca
cgattacctagtaacagcatgttcccagtacatgatccaattgcggggatatccagccaa
ttccccggggggttaaatttaaacgctccaactagttccagtgcaataagtcttggacca
ttggtatctggaccagggtcaccgagtcgcatatttgggaatcccactacgtcggtagaa
agttcctcccagtttggaggaattatgcctcaaccgcctccacatcatcatatctccgcc
actgtatcaaactcaacgactgcagttggaacaactggtgctggtaccagcatgcccagt
ggtatgcagtctggaattgaacaacttcgtcaaggaaatattgctaacttgttgccagat
atgtgtggccctgtatctaaggagattgaagacgaaacaaacagctacttccaaagaata
tataaccgtccgccttatccaacattatcgattgatgaggttctggacttgcttaaaaaa
tttcaagattctccaaaccagcgagaaagaagcctttttaattgtatgattaaaaacctg
ttcgaagaatatcagtttttctatcaatatcccgacgccgagctccacataacctcccag
cttttcgggggcataatagaaagaggacttgtgccaactattcctcttggtattgctctt
agatatgtcttagaagcgctaagaaaacgtctggatagtaatctatacatctttgggatt
acagcgctggatcgatttaaaacacgattaaaagattatcctcaatattgccaacatatt
agttgtattcctcatttcaaagactttcctcctcatttaatcgaatgggttgaatttggt
tcccagtcattagtaccacctggtgagcctcaggctccagatggatcttttaggccttcg
tcacaaagacgcagtactgaaattgaaactttgcctactcaaacaaccacccttcaagta
gccaaaactaccgtcaccgttacaagcacaacctctagctcaacaacgattgtacgtcca
tcaatttctaccgttgggggtcgtccatctattgctaatacaaccaatatcgacacttta
atcaatgcaaggcaagcgacaggccattcggaacttgtagttccatctgtggatatacag
gataaaatagcgtttatttttaataatctaagtctcatgaacatgcaacaaaaggctgcg
gatttgagagaacaactcaaagatgatatttacacagtatggttagctcaatatttggtc
atgaaacgtgccagcattgaaccaaactttcacaatgtgtactcgagttttttggaagtt
ctatgtatgaactcattgtatgatgatgtaattatagaaacttatcacaacatccgtatc
ttgttgcggagtgacaaagttcaatttagctgttctgatagaacgcttcttaagaatctt
ggacattggttaggcttaatgaccctggcacgaaatagacctattttaacgatagaactt
gacaccaaacctcttataattgaagcttatcacaatggacaacatgaattattttacata
gtaccttttatagccaaagttatggaatcttgtgctagaagtagggtttttaagccacct
tgtccctggacaatgggaatcatgaatcttttagcggaattgcatcaagaacatgatctg
aaactcaatttaaagtttgaaatagaagttttgtgtaagactctcaacctggatttaaat
accttgagtcctggaaacttactaaaggattatgatagactgcacaaaatactgaacgtt
aaaaatttttccctacaacatcatcagacctctatacaatctcatcacccagctgctttg
gcaaaacctggtggggcggaaccctcttttgtcatgcctacaggacacaagttagaacat
ggtggtgtaatgcatgggggaaatgtaacatcttcgtccaatataggagcgtttaacaca
cctgtaacatcagtccagcctgggtctgctggtgcaggaatgggagcagctcttgttgct
acacctataatcagtttgacagggtctgcagcacttatgggtgggatgggaatgcaaggt
caaaatcctaggttgtatgacacatcccatcctgagtcattggccggacctccacaaact
aatgaacctatgacaccgccagttattcaacagcaacccgcatctagtaataacacagtt
actcctgcaactttagttcggcaatctgaacccaaatttcatttcacggatattaacacc
agtaatttaaatggaattgtaccacatataagtatagatagtcgattaacactactaaga
gatcaacctgacttagttcagctaattaaacttgcaattgaaaaatctattcaagaatgg
gcctctcctgtcattgatcgggccatcaagatcgctctcacgacttgtgagcaaatagta
aaaaaagactgtgccctagatcatgatgaaaacagattacgccactctgctcattacatg
gtacgaaatttaactgctggcatggctatgattacttgtagagatcatttactcctttct
atcaagactcatctgaagaattttatgattactcttgggcgtaatcttactcctaatcaa
acagaagcaattgaaatgactgtgtcggtaatagctaacgataatgttgaacttgcttgt
gctttcattcaaaagaaagcgattgaaaaagcaattccagaaattgataagagacttaaa
ggtgaatacgacaatcgtatcctagctcgtaaggaaggtcggcgccattgggatggagct
gccttggcttaccaggctgaacgaatgcctgaaatgattcgcctcaaagttggagctgta
tcacaacagcaaaatgccgtatatgaagaatttgcgcataatattcccggctttaagcct
ttaacagacagagaaattttggctattgcaccaaaaccacttgttgatcctggaccagtc
gttttgtcatcgtctagcaatacaatggccccttcagaagattgtattgccattcttgat
gaagtattctcaaagcttgaaccatttgttgcaaattgtaccggtttacctacaactcct
catatggctaatctacacgcacttgttcagaatctagccgttactcgttctagcaaggag
gtaaacacaataagtcttttaatccacaaggctgttgaaggcttattggaagggctcaca
ccgaatcttccagtagaaacagaaaatcttgcgagatatagagatgcgaatttgttagtt
ctgcgagctctttctgatccacgagcatttggagccaattggaccagtagacaagtaacg
ttagctcttatcgaagcccgtgaagaactcaaatataatttggatgctgttgatatatta
attagatctgggtttgtatctcttctagattatgataaacatctgtcccaagcgatgcag
ggtggagaaaatgtaatagcaacagcttttgccatgcatctttgtaaaatttacttaata
gatgaccgatctaatgctcacataattgaaagtgatctctttgggacaatagaaaccctt
caaaaaatatctaccaactcgcccagacctccagatggaattatcagcttaatggaaatg
attaagatgtcaagtgagagactagagcaaaaccttgcaatggcaggtcctacaggacaa
ttacattccggtatccagcaagctcgtgaatttggagaccccaggggccttttggaaaaa
acggaatttttgttgcgggagtgggtcaatgcgtaccattcgagggacgctggcaaagat
tcaagacaggcattttttatattcgtcaagcgtatgaacgaacacggaattttaaagaca
gacgatttgattaccagattctttcgaatgtctactcagatgtgtgtagacctttgctat
agggctctcgctgaacagaataattcgcctactttggtgcgtgcaaagtgcttccacact
ttggatgcttatgtccgcttaatcactctccttgtaaaacattctggagagacacaaaat
actgtaaccaaagttaatttgttgaataaagttctaggaatcgtcgctggagtgctactc
atagaccatgatgtccgtaatacgggtttccagcaagtaccgtatcatcgaattttcatt
atgttgtttttggaattgaatactccagatcatatcttggctaccatcaattttcaagtt
ttaatggcttacagcaatatgttgcatctgttaagaccggcgaaagcccccgggttcgcc
tacgcttggctcgaaattgtatcgcatcgggtctttatgcaacaagttttagttaacagt
ccacaagcgaagagttggccaatgtatgcacaactattggcagatctattcaaattctta
gctcctttccttagaaacgccgagctagcaaagcctgtccatcgattatttagaggaaca
caacgggtactactcgtgcttttacatgatttccctgatttcttgagtgattatcattat
actttctgcgacgtcatacctccaaactgtattcaaatgcgaaaccttattttatcagct
tttccacggagtatgcgtttgcccgatccttttatgcctaatttgaaagttgatatgctt
cctgaaatatcaattgcgccacgaatgtgtgctaattattcagcaatgctaaaaccaagt
tttaagaaagagctggattcatatttgaaaaatagaggtccagtttcatttctcgttgaa
gtgaggagtcacttggtaattaatggaagtggtggtgagtctggaggcaatggcacaaat
tgttcaaaccggtacaatattcaaatgatcaatgccctcgtgatgcacgtaggaatatca
gccattaactatatccggtccaaacaattagcgccaaatatggctaccattgctcattca
tctcatatggatatattccaaaacttggctgtggatctcgagacggagggaagatacttg
tttttaaactgtattgcaaaccagctacgttatcctaactctcacactcattacttttcc
tgtaccttattgtatctttttgctgaggccaatacgcaagcaattcaggaacaaattaca
agagtccttcttgagagactcattgttaatcgtcctcacccatggggacttctcattact
tttatcgagctcatcaaaaatccaacctataaattttggacccatgattttgtgcattgc
gccccagagataaggaaattatttgaatccgtagccaggtcttgtatggttccctccttg
ccaagggacaatggagataacgaataa
DBGET
integrated database retrieval system
