Lepeophtheirus salmonis (salmon louse): 121123875
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Entry
121123875 CDS
T08214
Symbol
pcm
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03008
Ribosome biogenesis in eukaryotes
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121123875 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
121123875 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121123875 (pcm)
03009 Ribosome biogenesis [BR:
lsm03009
]
121123875 (pcm)
03016 Transfer RNA biogenesis [BR:
lsm03016
]
121123875 (pcm)
03036 Chromosome and associated proteins [BR:
lsm03036
]
121123875 (pcm)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121123875 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
121123875 (pcm)
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
RNases
121123875 (pcm)
Transfer RNA biogenesis [BR:
lsm03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121123875 (pcm)
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121123875 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
TAP_C
Motif
Other DBs
NCBI-GeneID:
121123875
NCBI-ProteinID:
XP_040574869
LinkDB
All DBs
Position
9:complement(30593030..30597990)
Genome browser
AA seq
1434 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKESSIPEFDHLYLDMNGIIHNCSHPNDDDPHFRLKEVQI
FENIFAYVEVIFRMIRPRKVFFMAVDGVAPRAKMNQQRGRRFRTSREAASNVKRAIDKGE
KLPSELPFDSNCITPGTRFMNELQGQLEYFVASKISTDPLWRGVKIILSGHNSPGEGEHK
IMDFIRFEKSKEGYDPNTRHCLYGLDADLIMLGLCTHDPHFSLLREEVKFGGRKNQNSKI
VSANKVNFHLLHLSLLREYIDLEFSMDNFREKLPFKYDLESIIDDWILMGFLVGNDFVPH
LPHLHINKNALSELYSIYKQVLLTLDGYINENGVLNLKRFEKFMAAMGEMELARFDEIYS
DMKWIEGKTARKNNKGQHTVLPTPGPGNVSELLEGNNIDELKTLDGNNMDNDDLKQLLKS
TDSYLEDDSQSSNSLDEFKDELEEADGRDHLYYIEFRQHKREYYMNKMRMISVTKEALNQ
VAQDYVRAIQWILHYYFHGCISWSWYYNHHYTPWITDIKNFSSMNYNFDLQSKPFKPFEQ
LLAVLPPPSGNLLPEVLRTLMTSENSPILDFYPNDFECDLNGKHQDWEAVVLLPFIDEIR
LLQAMEPLLAYLRPAEGKINSHGPMKSYVYTPNSNGVCKAPMYFPTIDLCYASITEIKRE
EWYVPYNKLNLGLMKSVKLNVYFPGFPTLQHLPHTARIHCTGVCVFETPSIENSCIISLN
KNSDKPDLNSICEQYLGKTIWVSWPHMKEALVVGVSNAENRVDLKNTGEKKSELITKTPI
SGKEFTSVISNITHKYKTRFAVEIGETHIVLFASVVTGRKYMYGPHGKVSLAKTWDPTPQ
PFALQTTKMDISVHASSLHYFHTLKDIFPKNSSCFILSDVAYGCMATVLGEKKGKIEVEC
NVPKEPNFQSVIQKNTSDKRAFIAGYAAARRLNISSLFLSRIMGSMYILRGERSEPLNRT
SKVNVGLNLKFSKRNEETVGFTRKCLESNTWYYSDKAIKLFEDYRRKFPEVIAFLSSSSR
STDDLFYVQDLFPETDENYSCPRLDELKSWISSIPSANLPRRSCGSDTLDETLVLELEKV
IESQRSDRMKILKLEIPPKLLYKPSFELGTSDPDPKNTNFILFDRIINVREGFSVPLGAR
GTLIGIVKQNKTSVFSYEVLFDQPFRGGVSIRSSPGRSFVLPSYAMIKISLNKLVSNDSH
GNPKKEEKPFSWFKNQRDEPNNSHLFHQRQEKVEESKALPDTNNDSVRKSKIQNTKPPNQ
ICIPPDPIHLPRNPAALFKSKNKNKNSEPIESVNIAKLKISCDSTVEPIAQNDDAISPSV
ISFFKSCDELSLAEKNTKEPSGFVPLQVHMKHAKKNLPSSNQKTVYSDTKNVDVHEAGTN
GQKESDSNVCKELIPDNPFGFNDNQVKTNFNDESTKKSTRKPRLGIGIKFDLTK
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccgaaattttatcgttggataagtgagcgttatccatgtctctctgaagtc
gtaaaggagagttcaatacctgaattcgatcatttgtatttggatatgaatggaatcatt
cataattgttctcatccaaacgatgacgatccgcatttcaggctcaaagaagtacagatt
tttgaaaatatatttgcctatgtggaggtgatatttcgaatgattcgtccaagaaaagtg
tttttcatggctgtggacggagttgcccccagggccaaaatgaatcaacagagaggaagg
agatttcgtacatcccgtgaagctgcttcaaacgtcaaacgtgcaattgataaaggagag
aaactcccttcggagcttccatttgattccaattgcatcactcctggaacacgcttcatg
aatgaattgcaggggcagttagaatattttgttgcttccaagatcagcaccgaccctcta
tggagaggtgtcaaaattatcctctcaggccataattctccgggggaaggagagcataaa
atcatggatttcatacgttttgaaaagtcaaaagaaggatacgatcctaatacaagacat
tgtttgtatgggttagatgcggatttgattatgttgggtctttgtacacatgatcctcat
ttttcgctacttcgtgaagaagtcaaatttgggggtaggaaaaatcaaaactctaagatt
gtgtctgcaaacaaagttaactttcatttactacatttatcgttacttcgtgaatatatt
gatctagaattctctatggataattttagggaaaagcttccttttaagtatgatttagag
tccattatagacgattggattctgatgggcttccttgtgggaaatgactttgtgccacat
ttaccgcatctccatattaataaaaatgctctatctgagttatattccatttacaaacaa
gttttactcacattagatggatacatcaatgaaaacggagtgctcaatttgaaaagattt
gaaaaattcatggcagctatgggagaaatggagctggccaggtttgatgaaatctactct
gatatgaagtggattgaaggcaaaactgcaagaaaaaacaataaaggacaacacactgtt
ttaccaactcctggaccggggaatgtgtctgaacttttggaaggaaataatatagatgaa
ttgaaaactcttgatggaaataatatggacaatgatgatcttaaacaacttttaaagtca
actgatagttatttagaggatgatagtcaatcttctaattcactggatgagtttaaagat
gaattagaggaggctgatggtagagatcatctctattacattgaatttcgtcagcacaaa
cgagaatattatatgaataaaatgcgaatgatctctgttactaaggaagctttaaatcaa
gttgctcaagattatgttcgagcaattcaatggattctacattattattttcatggatgt
atatcctggtcttggtattataatcatcattataccccttggattacagatataaaaaac
ttttccagcatgaattataattttgaccttcagagtaaaccattcaaacccttcgagcaa
cttttagctgtattacctcctccatcaggaaatttattaccagaggttttacgtacatta
atgacctctgagaattcacctattttagatttctatccaaatgactttgaatgtgatttg
aatggtaaacatcaagactgggaagctgttgttttactacccttcattgatgaaattaga
ctcttgcaagcaatggagcctttattagcgtatcttcgaccagccgagggtaaaattaat
tcacatggcccaatgaaatcatatgtgtatacccccaattcaaatggagtgtgcaaagct
ccaatgtattttcctacgattgatttgtgctacgcatctataacagaaatcaaacgggag
gaatggtatgtgccatataataagctgaatttgggtctcatgaaaagtgtcaaacttaat
gtatacttccctggatttccaactctgcaacacttacctcataccgcacgtatacattgt
acaggagtgtgcgtttttgaaactccaagtatagaaaacagttgcataatttctcttaac
aagaactcagacaaacccgatctcaattctatttgcgaacagtatttaggtaaaacaatt
tgggtatcttggcctcatatgaaagaagcattagtcgttggtgtgtcaaatgcagaaaat
cgtgtagatctgaaaaatacaggagagaagaaatctgaattgattacaaagaccccaatt
tctggcaaggaatttacatcagttatttctaacattactcataagtataaaacacgattc
gctgttgaaataggtgaaactcatatcgtattgtttgcttctgttgtgactggtcgtaag
tacatgtatggaccccatggaaaggttagcctggctaaaacatgggatccgaccccacag
ccatttgctcttcaaacgactaaaatggatatatccgtacatgcttcctcactgcactat
ttccatacactaaaagacatttttccgaagaattcttcttgttttattctttctgatgtt
gcctatggttgtatggcaacagttctaggagaaaaaaaagggaaaattgaagtggaatgc
aacgtacctaaggaacctaatttccagagtgtaattcaaaaaaatacctctgataaaaga
gcattcatagcgggatacgctgctgcacgtcgtttaaatatttcaagtttattcctttca
aggatcatgggctctatgtacattctacggggtgaaagatctgagcctctaaaccgtacg
agtaaagtaaatgtaggacttaatttaaaattttctaaacgaaatgaagaaactgtaggt
tttactaggaaatgccttgagagtaatacatggtattactccgacaaggctattaaactt
tttgaggactacagaagaaagtttccagaagtaattgcatttctttcttcgtcaagtagg
tccactgacgaccttttttacgttcaagatcttttcccagagactgatgaaaattattca
tgtccaaggttagatgaattaaaatcttggatttcttcaattccttccgctaacttacca
aggcgttcctgtggatcagatactttagatgagactttggtacttgagttagaaaaggtt
attgaatctcaacgatctgatcgtatgaagattctaaagcttgaaattcctccaaaactt
ttgtataaaccgagttttgaattgggaacatcggaccctgaccctaaaaatacaaatttt
atactctttgatcgtattataaatgttagagagggattttctgttcctttgggtgcacga
gggacactaattggaattgttaaacaaaataaaactagtgtgttttcttacgaggttttg
tttgatcaaccttttcgaggaggtgtctcaattagatcatcccctggaagaagttttgtt
cttccctcatatgcaatgataaaaatttctctgaataagttagtaagcaatgacagccat
ggaaatccgaagaaggaagaaaaaccattttcttggttcaaaaatcagagggatgaaccc
aacaactctcacttattccatcaaaggcaagaaaaagttgaagaatctaaagcccttcct
gatacaaataacgatagtgttagaaaatcaaagatacaaaatacaaaacctccaaatcaa
atttgtattccacctgatccaatccatttaccacgtaatccagctgctctttttaaaagt
aaaaataagaataaaaattcagaacctatagaaagtgtaaatatagcgaaattaaagatc
tcatgcgatagtacagttgaacctattgctcaaaacgacgatgctatatctcccagtgta
atttcattttttaaatcttgtgacgaattgtcactggctgaaaaaaatactaaagaacct
tctggttttgtacctttgcaggttcatatgaaacatgcgaaaaaaaatcttccatcctca
aatcagaagacagtatattcagacacaaagaacgtggatgtgcatgaagcgggtacaaat
ggtcaaaaggaatctgattctaatgtgtgtaaggaattgattcctgataacccttttggt
ttcaatgataaccaagttaagacaaatttcaatgatgaaagtacaaaaaagtcaacaaga
aagcctcgtttaggcattggaattaaatttgatttaacaaaatag
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integrated database retrieval system
