Lepeophtheirus salmonis (salmon louse): 121125345
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Entry
121125345 CDS
T08214
Symbol
Xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells homolog
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
121125345 (Xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121125345 (Xpc)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121125345 (Xpc)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
BHD_1
Rad4
Motif
Other DBs
NCBI-GeneID:
121125345
NCBI-ProteinID:
XP_040576429
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Position
10:complement(21705367..21710473)
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AA seq
575 aa
AA seq
DB search
MPKKPSKRKSGSAETLISPKKPKNPDEETNFDDLLSQIATQSQNQSLWNKKETILGDEEK
DETNEEFSVEPGLISDSSEDDDYEEEELIQNPTSSPTKDGNKVIEIHIKSESKPTLKDKR
SKKRMQAIQREAKHVKNLIHRVRFLSSVAHLLYVGHNLGNSDTFRALSLSLFPQAHFKTT
PTPTSISSFIKWYYSASSVFPGCDLNMPLEDRLLSAFPKLEFSSQLDRILGFYLLSLSAG
WNVRLLYAPPEDNNDSDNRHWIEIWTSDPSWTIVDPFSGRSGKISKEIEKRLSPFWYVIA
LSKESTLKDLTPKYVQNYVTSVSKKRKPHEEWVQSTLRPFLSNGVSKEDDELYKLMNEAP
IPSSLSALKGHPLYITPKHLGKLEVIYPLCVKPVGYIKRIEPVFERKHVHKLRSKISWEK
DGMAIKEGEVPRICDKDKAFWGSWQIKKFVPPEAKNGKVPKNEFGNVELYKPWMLPKGTV
HIPISGIIRLAKKLDIDFAPAVIGWDYHIGGSHPVIDGIIVCTEVQDLIMDAWNNDEDVK
STQYYEKRVLRILSNWRKLTKGLILRERFKLKYKV
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaaaaccatctaaacgaaaatctggttcagcagaaaccctaatatcacccaaa
aagcctaaaaacccagatgaagaaacaaactttgacgatcttttatcacaaattgctact
caatctcaaaatcagagtctttggaataaaaaagaaaccattttgggggatgaggagaag
gatgaaacaaatgaagagttcagtgtagagccggggctcatctctgactcttccgaagat
gatgattacgaagaagaagaattgattcagaatccaacgtcttcgcccacgaaagacggg
aataaagtgattgagattcacattaaatccgaatccaagcccacactaaaagataaacgc
tctaaaaaaagaatgcaagctattcaaagagaggctaaacacgtcaaaaatctcatacat
cgtgttcgcttcttatcttctgtagctcacttattgtacgttggacacaacttagggaat
tcggatacttttcgtgccttaagtttatccctatttcctcaagctcattttaaaaccaca
cccacgccaacaagtatttcttcatttatcaaatggtattatagtgcgtcctctgttttt
ccgggatgcgatttaaacatgcctctggaagatcgtctcctttctgcatttccaaaatta
gaattctcttctcagcttgatcgtatattaggattttatctcttaagcctatcagcggga
tggaacgtacgccttttatacgctcctccagaggataataatgatagtgataatcgtcac
tggattgaaatttggacaagtgatccttcatggaccattgtagatccatttagtggtcgt
tctggtaaaatatcaaaagaaattgagaaaagattgagtcccttttggtatgttatagct
cttagtaaggaatccacactcaaagatcttacaccaaaatatgttcaaaattatgtaacc
agcgtatccaaaaaaagaaaacctcatgaggaatgggtacaaagcacacttcggcctttt
ctttctaatggtgtatctaaagaggatgacgaattatacaaactcatgaatgaagctcct
attccatcatctttatcggcgcttaaagggcatccgttgtatatcacgcccaaacatctt
ggtaaattagaagtgatttatccgttgtgtgttaaacccgtgggttatataaaacgaata
gagccagtgtttgaaaggaagcatgtccataaactcaggagtaaaataagttgggaaaag
gatggcatggcaatcaaagaaggagaagtcccaaggatttgtgataaggacaaagccttt
tggggtagttggcaaattaaaaaattcgttcctcctgaagctaaaaatggtaaagttccc
aagaatgagtttggaaatgttgaactctacaaaccttggatgctccccaaaggcactgtt
cacattcctattagtgggataattcgtttggccaaaaagctggacattgattttgcacct
gcagtgattggttgggactatcatattggtggtagtcatcctgtaattgatgggatcatt
gtgtgtacggaggttcaagatctaatcatggatgcatggaacaatgatgaagatgtcaag
tctacccaatattacgaaaagagagttcttcgaattctcagtaattggagaaagttaact
aagggtctcattctcagagaaagattcaaattgaaatataaagtttaa
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