Candidatus Liberibacter solanacearum: CKC_04985
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Entry
CKC_04985 CDS
T01373
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lso
Candidatus Liberibacter solanacearum
Pathway
lso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKC_04985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lso03021
]
CKC_04985
03400 DNA repair and recombination proteins [BR:
lso03400
]
CKC_04985
Enzymes [BR:
lso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKC_04985
Transcription machinery [BR:
lso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKC_04985
DNA repair and recombination proteins [BR:
lso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKC_04985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADR52746
UniProt:
E4UDR8
LinkDB
All DBs
Position
complement(1066657..1070805)
Genome browser
AA seq
1382 aa
AA seq
DB search
MAKDVVFNGLGRARKFFGKIPEIIDIPDLIEVQRASYDQFLMMNSSPEERPNEGLQAAFK
SVFPITAFSGAAMLEFESYEFDSPKFDVDDCLRRDLTYAAPLKIILRLIVFDIDEFTGAK
SIKDIKEQSIYMGDVPLMTKDGTFVINGTQRIVVSQLHRSPGILFDHDKGRASLSGKLLY
ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMNSEDILSTFYSKIVYVK
KGEYWCFPLSCADLIVGSKVSSSLIDVDTGERVIESGKRFTANLLKNLKEKGVGFLGVTS
DYLYGSYVAEDIVNETTGEIYLEAGDAIDEPTLAAIVSCGIEDIPVLHVDSIDSNAYVRN
TLVLDKNKDYKDALLDIYRVMRPGDVPTVSAAESMFNFLFFDPDKYDLSAVGRVKMNMRL
NLDVPDTVRHVRKEDVIAIIKILVDLRDGKGKIDDIDNLGNRRVRSVGEMLKNQYRLGLL
RMERSIKERISSVDIDSVMPQDLINAKPVVSAVREFFCSSQLSQLEEHVNSLSRITHTRR
LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET
PYRKVCDGKVTNEIVYLSAIEEENRYIAQSNASLKEDGSFAEELVFCRCAGEEVLVPREN
INFMDTSPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA
KSSGAAIVAKRAGIVEQVDAIRIVIRVVEEDLNPSASGVDIYRLMKFQRSNQNTCVNQRP
LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT
SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGVICVGAEVNPGDILVGKITP
KGDSPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVEVRIFNRHGIDKNERSLSVE
REQIELLARDRDDEQAILDRNIYSRLKEILCSQTAISGPKGFKKSSVLSSDLISGYQRSQ
WWQFAVQDEKVQRNIESLRAQYEHSKSVLESRFKNKIEKIQWGDDMSPGVLRVVKVFVAM
KRSIQSGDKMAGRHGNKGIVSRILPCEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIFETH
LGWACVGLGKKIKSIINDYKANGDIAPLRSFLEKIIGTGPHAEKISDYDDASVLRLAEQW
KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN
HMVSDKVHARSIGSYSLVTQQPLGGKSNRGGQRLGEMEVWCTQAYGAAYVLQEMLTIKSD
DVVGRTKVYESIVSGDNSFETGIPESFNVLVKEMQALGLSIDLENSRAKSTVKMEEIPDL
NE
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggacgttgtgttcaatggtctcgggcgtgcgcgcaaattttttggaaagatt
cctgagataattgacatacctgatcttattgaagttcagagggcatcctatgatcagttt
ttgatgatgaatagttctcctgaggaacgtcctaatgagggtttacaggccgcatttaag
tctgtttttcctattacggctttttctggggctgcgatgcttgaatttgagtcttatgaa
tttgactccccaaaatttgatgtggatgattgcttgcggcgtgatttgacgtatgctgct
cctttaaagattattttgcgtttgattgtttttgatattgatgaatttactggtgcaaaa
tctatcaaagatataaaggaacaaagtatctatatgggcgatgttccacttatgactaaa
gatggaacttttgttattaatggtactcagcgtatagttgtttctcagttacatcgttct
ccaggcatactttttgatcatgataaagggagggccagtttatcaggaaagctattgtat
gcttgtcgtattattcctgatcaagggctatggatggacatagaatttgattccaaggat
attatccatgtgcgtatagataggcgtcgtaaagttcctgtgacgtcttttttaatggct
ttgggtatgaattctgaggatattttatctacgttttattccaaaattgtttatgtaaaa
aagggcgaatattggtgctttccattgagttgtgccgatttgattgttggttcaaaagta
tcttctagtttgattgatgttgatacgggtgagcgagttattgaaagcgggaaaaggttt
actgcgaacttgctcaaaaatcttaaagaaaaaggggtaggttttttaggggttacttca
gattatttgtatggatcttatgtagcagaagatattgtcaatgaaacaacaggggagata
taccttgaagctggtgatgcaattgatgaacctactctagcggcaattgtatcttgtgga
attgaggatatacctgttctccatgtcgattctattgattctaatgcttatgtgcgtaat
acattagtattggataaaaacaaagattacaaagatgcacttctggatatttatcgtgtt
atgcgtccaggtgatgtgccaactgtttcggctgcagaatcgatgtttaatttccttttc
tttgaccctgataagtatgatctttctgcggttggtcgcgttaagatgaatatgcgtctt
aatcttgatgttcctgatactgtgcgtcatgtcagaaaagaagatgtgatagctattatc
aaaatcttagttgatctgcgtgatggtaaggggaagattgatgatattgataatttagga
aatcgtcgagtacgttctgtcggtgagatgttgaaaaatcaatatcgtcttggactattg
cgtatggaacgttctattaaggaacgcatttcatcagttgatattgattctgttatgcca
caggatctcattaatgctaagcctgtagtatctgctgttcgtgaatttttctgttcctcg
cagctttctcaacttgaagaacatgttaactcgctttcgcgtattacacatacgcgtcgt
ttatctgctctagggcaagggggtgtggcaagagcgagggcaggggttgaaatgcgtgat
gtccatccaacgcattacggtcgtatttgtcctgcagagacctcagaaggccataacata
ggtttggtgagttctcttacatcttttgcgcgtgttaacgcatatggattcattgaaact
ccatatcgtaaagtttgtgatggtaaggttacaaatgagatagtatatctttctgctata
gaagaagaaaatcgttatattgctcagtctaatgcttctcttaaagaggatggctcgttt
gcggaagaattagttttttgtcgttgtgcaggagaagaagttcttgttcctcgagaaaat
ataaattttatggacacttctccaaaacaagtggtttctattgcagcatctcttattcct
ttcttagaaaatgatgattcaaaccgtgttcttatgggttgtaatatgcagcgtcaagct
gttccattattgaaggccgaagctccttttgttgggactggtatggaatctgtcgttgcc
aaaagttcaggggctgctattgttgcgaagcgtgctggaatagtagagcaagttgatgca
atacgtatagtcattcgtgtggtggaagaagatttaaatccttctgcttcaggggttgat
atttatcgtttaatgaaatttcagcgttccaatcaaaatacttgtgttaatcagcgtcca
ttagtaaaggttggtgatgaagttcgtagaaatgatattatagcggatggtccatctaca
gatttaggggatttggcgcttggtcgtaatatgctcgttgccttcatgccttggcacgga
tacaactttgaagactcaatgttgatatctgagcgtatggtttcggaagatgtttttacc
tctattcatatagaggaatttgaggttatggcgcgtgatactaagttaggaccagaagaa
ataactcgtgatatacctaatgtctcggaagagggattgaagaatattgatgagtgtgga
gttatttgtgttggagctgaggttaatcccggtgatattttagtaggtaaaattactcct
aagggtgacagccccatgacccccgaagaaaaacttttacgtgctatttttggtgaaaaa
gctgtagacgttcgtgatacatcgttgcgtgttccttctggagtttctggtacagttgtt
gaagttcgtatttttaaccgccatggtattgataaaaatgagcgttctttgtctgttgaa
cgagaacaaatcgagcttcttgcacgagatcgagatgatgaacaagcaattttagatcgg
aatatttatagtcgtttaaaggaaattttatgcagtcaaacagcgatttccggacctaaa
ggctttaagaaatcttctgttctttctagtgatttgatatctggatatcagcgatctcaa
tggtggcagtttgctgtgcaagatgagaaagtgcagcggaacattgaatctttaagagct
caatatgaacattctaaatctgttcttgagagtcgttttaagaataagattgaaaagata
caatggggggatgatatgtccccaggagttttaagagtagttaaagtttttgttgctatg
aagcgttcaattcagtcaggagataagatggctggacgtcatggtaacaaaggaattgtt
tctcggatacttccttgtgaagatatgccttttcttgaagatggtactcctgttgatatc
gttcttaatccactaggtgttccttctcgtatgaatgttggacaaatttttgagactcat
cttgggtgggcatgtgttggtcttggtaagaagattaagagtattattaatgattataag
gccaatggtgatatagcgccattacgtagttttttagagaagattatagggactggtcct
catgctgagaaaatatcagattatgatgatgcgtctgtactacgtttggcagaacaatgg
aaatcaggtgtgcctgtttcaacgcctgtttttgatggggctgatgaagaggctattaat
tctatgcttcgtatggctgatttggatgaaagtgggcagtccattctttatgatggtctg
actggtgaaccatttgatcgaccagttaccgttgggtatatttatatgttgaagcttaat
cacatggtttctgataaagttcatgctcgttctattggtagttattctcttgtgacacag
caacctttaggaggaaaatctaatagaggtggtcagcgtttaggagaaatggaagtatgg
tgtacgcaggcttatggtgctgcctatgttttacaggaaatgcttactattaaatctgat
gatgttgtaggtcgtactaaagtttatgaatctattgtttctggagacaactcttttgaa
actggtataccagagagtttcaatgtcttggtaaaagaaatgcaagctttgggtctaagt
attgacttagaaaattcacgtgcaaaaagtactgtaaaaatggaagagattcctgattta
aatgaataa
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