Lysobacter soli: GOY17_04940
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Entry
GOY17_04940 CDS
T06337
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lsol
Lysobacter soli
Pathway
lsol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GOY17_04940 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsol03021
]
GOY17_04940 (rpoB)
03400 DNA repair and recombination proteins [BR:
lsol03400
]
GOY17_04940 (rpoB)
Enzymes [BR:
lsol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GOY17_04940 (rpoB)
Transcription machinery [BR:
lsol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GOY17_04940 (rpoB)
DNA repair and recombination proteins [BR:
lsol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GOY17_04940 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QGW64316
LinkDB
All DBs
Position
1065539..1069708
Genome browser
AA seq
1389 aa
AA seq
DB search
MTTASTTNYSFTEKKRIRKDFGKRKSILEVPFLLAIQVDSYREFLQEHTDPAKRADRGLH
AALKSVFPIVSYSGNAALEYVGYKLGEPPFDERECRNRGLSYGAPLRVTVRLVIYDRESS
TKAIKYVKEQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKL
LYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLREFFEVNTF
HIDPNEGVQLELVPERLRGETLNFDLADGEKVIVEAGRRITARHVKQLEQAGVAALAVPD
EYLVGRILSHDVVDTKSGELLATANDEITEDHLVAFRKAGIETVGTLWVNDLDRGAYLSH
TLRIDATKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRL
GRKETEGASVLYDAKYFAERKDEESVRLRGECGNTSDILDVIRVLTEIRNGRGTVDDIDH
LGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFG
SSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGP
NIGLINSLAVFARTNKYGFLETPYRKVVDGRVTDDVEYLSAIEENEYVIAQANAPQDEKG
TITAQFVACRYQGESMLRPPNEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQR
QAVPTLRAQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNESEIVGETDA
GVDIYTLIKYTRSNQNTCINQRPLVNVGDVVARGDVLADGPSTDIGELALGQNMLVAFMP
WNGYNFEDSILLSERVVEQDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLD
ESGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDG
TVIDVQVFTRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLKSQLVGRIANG
GGGLKKGDTVTSLVLDGLSRKDWFTLRMKDDEAVEAIERAQKQIEVHKAEFEKRFADKRG
KITQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVQDMPYAADGQTV
DIVLNPLGVPSRMNIGQILEVHLGWAAKGLGQKIQRMLEAQQAIGELRKFLNDIYNHDNS
VVGERVDLTQFTDEELLRLAKNLTDGVPMATPVFDGAAESEIKRMLELADLPSSGQTELF
DGRTGEAFERKVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYEMVAGMPESFNVLVKEIRSL
AINMELEEN
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgaccacggcttccacgacgaattattcgttcaccgaaaagaagcgcatccgcaaggac
ttcggcaagcgcaagtcgatccttgaagtgcccttcctgctggccatccaggtcgattcc
taccgcgagttcctgcaggaacacaccgatccggccaagcgtgccgatcgcggcctccat
gccgcgctgaagtcggtgttcccgatcgtcagctacagcggcaacgctgcgctggagtat
gtcggctacaagctcggcgaacccccgttcgacgagcgcgagtgccgcaaccgcggcctc
tcctacggcgcgccgctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcgtcg
accaaggccatcaagtacgtgaaggagcaggaggtctacatgggcgagatcccgctcatg
accgaaaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcac
cgctcgccgggcgtgttcttcgaccacgaccgtggcaagacgcacagctcgggcaagctg
ctgtacagcgcccgcatcattccctaccgcggttcgtggctggacttcgagttcgacccg
aaggacgcgctgttcacccgtatcgaccgtcgccgcaagttgccggtgaccgtgctgctg
cgtgcgctcggttacaacaacgaggaaatgctgcgcgagttcttcgaggtcaacacgttc
cacatcgatccgaacgaaggcgtgcagctggagctcgtgccggagcgcctgcgtggcgaa
acgctgaacttcgacctcgccgacggcgagaaggtcatcgtcgaagccggccgccgcatc
accgctcgccacgtcaagcagcttgagcaggccggcgtggccgcgctcgccgtgccggac
gaatacctggtcggccgcatcctgtcgcatgacgtcgtcgacacgaagtccggcgaactg
ctggctacggccaacgacgagatcaccgaagaccatctggtcgccttccgcaaggcgggc
atcgaaaccgtcggcacgttgtgggtgaacgacctcgatcgcggtgcgtacctctcgcac
accctgcgcatcgacgcgaccaagacgcagctggaagcgctggtcgagatctaccgcatg
atgcgtccgggcgagccgccgaccaaggacgccgctcagaacctgttccacaacctgttc
ttcaccttcgagcgctacgacctgtcggccgtgggtcgcatgaagttcaaccgtcgcctt
ggccgcaaggaaaccgagggcgcgtcggtgctgtacgacgccaagtacttcgccgagcgc
aaggacgaagagtccgtgcgcctgcgtggcgagtgcggcaacacgtcggacatcctcgac
gtcatccgcgtgctgaccgagatccgcaacggtcgcggcaccgtcgacgacatcgaccac
ctgggcaaccgtcgcgtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtcggc
ctggtccgcgtcgagcgcgccgtgaaggagcgcctgtcgatggccgagtccgaaggcctg
acgccgcaggaactcatcaacgccaagccggtggctgccgcgatcaaggagttcttcggc
tcctcgcagctgtcgcagttcatggaccagaacaacccgctgtcggaagtcacgcacaag
cgtcgcgtgtcggccctcggcccgggcggcctgacccgtgagcgcgccggcttcgaagtg
cgcgacgtgcacccgacccattacggccgcgtctgcaccatcgagacgccggaaggcccg
aacatcggcctgatcaactcgctggccgtgttcgcacgcaccaacaagtacggcttcctc
gagacgccgtaccgcaaggtcgtggacggccgcgtgaccgacgacgtcgagtacctgtcg
gcgatcgaagagaacgagtacgtcatcgcgcaggccaacgcgccgcaggacgagaagggc
acgatcaccgcccagttcgtcgcgtgccgttaccagggcgagtcgatgctgcgtccgccg
aacgagatccacttcatggacgtctcgccgatgcagaccgtgtcggtcgcggcggcgctg
gttccgttcctcgagcatgacgacgccaaccgcgcactgatgggcgcgaacatgcagcgc
caggccgtgccgacgctgcgtgcgcagaagccgctggtcggcaccggcatcgagcgcgcc
gtggcgcgcgactcgggcgtgacggtgaacgcgcgtcgcggcggcgtgatcgagcagatc
gacgcgggccgcatcgtggtgaaggtgaacgagtcggagatcgtcggtgagaccgacgcc
ggcgtcgacatctacacgctgatcaagtacacgcgttcgaaccagaacacctgcatcaac
cagcgtccgctggtcaacgtgggcgacgtggtcgcgcgcggcgacgtgctggccgacggt
ccgtcgacggacatcggcgagctcgcgctcggccagaacatgctggtcgcgttcatgccg
tggaacggctacaacttcgaagactcgatcctgctctccgagcgcgtggtcgagcaggat
cgttacaccacgatccacatcgaagagctgacctgcgtcgcgcgcgacaccaagctgggt
ccggaggaaatctccgccgacatcccgaacgtctccgagcaggcgctgaaccgcctcgac
gagtcgggcgtggtgtacatcggcgccgaagtgcgtgcgggcgacatcctcgtcggcaag
gtcacgccgaagggcgagagccagctgacgccggaagaaaagctgctccgcgcgatcttc
ggcgagaaggcgtccgacgttaaggacagctcgctgcgcgtgccgccgggcatggacggc
accgtcatcgacgtgcaggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgc
cagatcgaggaatcggaaatccgtcgcgtcaagaaggacttcgacgaccagttccgcatc
ctcgaagcggcgatctacgaccgcctgaagtcgcagctcgtcggccgcatcgccaacggc
ggcggtggcctgaagaagggcgacaccgtcacctcgctggtgctcgatggcctgtcgcgc
aaggactggttcacgctgcgcatgaaggacgacgaagccgtcgaggcgatcgagcgcgcg
cagaagcagatcgaagtgcacaaggcggagttcgagaagcgcttcgccgacaagcgcggc
aagatcacccagggcgacgacctcgctccgggcgtgctgaagatggtgaaggtgttcctc
gcggtgaagcgccgcatccagccgggcgacaagatggccggccgtcacggcaacaagggt
gtcgtgtcgaccatcgtgccggtgcaggacatgccgtacgcggccgacggccagaccgtc
gacatcgtcctgaacccgctgggcgtgccgtcgcgtatgaacatcggccagatcctcgaa
gtgcatctgggctgggccgccaagggcctgggccagaagatccagcgcatgctggaagca
cagcaggcgatcggcgagctgcgcaagttcctcaacgacatctacaaccacgacaactcg
gtggtgggtgagcgcgtcgacctgacgcagttcaccgacgaggaactgctgcgtctggcg
aaaaacctcaccgacggcgtgccgatggcgacgccggtgttcgacggtgcggccgagtcg
gagatcaagcgcatgctggaactggcagaccttccgtccagcggccagaccgaactgttc
gacggtcgcaccggcgaagcgttcgagcgcaaggtcaccgtcggctacatgcacatgctg
aagctgaaccacctggtcgacgacaagatgcacgcgcgttcgaccggtccgtactcgctc
gtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggcgaaatg
gaagtctgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtg
aagtccgacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgacggcgagtac
gagatggtggccggcatgccggagtccttcaacgtcctggtgaaggaaatccgctcgctc
gcgatcaacatggagctggaagaaaactga
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integrated database retrieval system
