Lysinibacillus sphaericus: Bsph_4629
Help
Entry
Bsph_4629 CDS
T00656
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lsp
Lysinibacillus sphaericus
Pathway
lsp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bsph_4629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsp03021
]
Bsph_4629
03400 DNA repair and recombination proteins [BR:
lsp03400
]
Bsph_4629
Enzymes [BR:
lsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bsph_4629
Transcription machinery [BR:
lsp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bsph_4629
DNA repair and recombination proteins [BR:
lsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bsph_4629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACA42073
UniProt:
B1HMZ5
LinkDB
All DBs
Position
complement(4469915..4473571)
Genome browser
AA seq
1218 aa
AA seq
DB search
MKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECHCGKYKRVR
YKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMSPRALEEVI
YFASYVVIDAGATNLESKQLLSEKEYRAYREKFGNTFEASMGAEAIKKLLGKIDLEDETH
SLKEELKSAQGQRRTRAIKRLEVVESFRNSGNSPEWMILDVLPVIPPELRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKEMAIELFKPF
VMKELVERGLAHNIKSAKRKIERLNNDVWDVLEDVIREHPVLLNRAPTLHRLGIQAFEPT
LVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYLTLERESARGEGTIFYGPNEVLIAYDTGHVHLHTRIAIKAGSLNNPTF
TEEQNNMFLLTTVGKVIFNEILPESFPYINEPTDFNLEQVTPEKYFVNLTIDEETLKELE
SDSAYNSLDEKGKIDAQRTAVLRKHFESVPVVNPFRKKFLGNIIAEVFKRFHITETSKML
DRMKNLGFKYSTRAGITVGVSDIVVLPDKGEILAVAQEKVDKVQAQFRRGFITEDERYDR
VISSWSAAKDEIQAKLMKSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIE
LPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGT
DRGLTIGALMEGTELIEALDERIVGRHTKKTIVHPETGEVILNKDGLIDQDVARAIIEAG
IEEVTIRSAFTCNTKHGVCKKCYGMNLATGEKVEVGEAVGIIAAQSIGEPGTQLTMRTFH
TGGVAGDDITQGLPRIQEIFEARNPKGQSVISEIAGTVSDITEIREGLKEITIQGDVETR
KYQAPYNARLKVIEGDNVERGQVLTEGSIDPKQLLKVKDVSTVQEYLLKEVQKVYRMQGV
EIGDKHIEVMVRQMLRKVRVIEAGDTDLLPGSLLDIHQFAEANADAVMDGKNPATCRPVI
LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRY
RQIRIEKDELDTEVVSAE
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcggtttagcatcccctgacaagattcgctcttggtcatatggtgaggttaaa
aaacctgaaacaattaactaccgtacgttaaaaccagaaaaagatggtttattctgtgaa
cgtatttttgggccaactaaggattgggaatgtcattgtggtaagtataaacgtgtccgc
tataaaggcgtagtttgtgaccgctgtggtgttgaagtaacgcgtgctaaagttcgtcgt
gaacgtatgggtcatatagaattagctgcaccagtttctcatatctggtacttcaaaggt
attcctagccgtatgggtctaattttagatatgtcaccgcgtgcacttgaagaagtgatt
tatttcgcttcatacgttgtgattgatgctggtgctacaaatttagaaagcaaacaatta
ctttctgaaaaagagtaccgcgcataccgtgaaaagttcggaaatacattcgaagcttca
atgggtgcagaagcaattaaaaaattattaggcaaaattgacctagaagatgaaactcat
tctttaaaagaggagttaaaatctgcacaaggtcaaagacgtacgcgtgctatcaaacgt
ttagaagttgttgaatcattccgtaactcaggtaactcacctgaatggatgattttagat
gtactacctgtaattccacccgagcttcgcccaatggtgcaattagatggtggacgtttt
gcaacttcagatttaaacgatctataccgtcgtgttatcaaccgtaataaccgattaaaa
cgtttattagatttaggtgctccaagcatcatcgtacaaaacgaaaaacgtatgttacaa
gaagctgttgacgcattaattgataatggtcgtcgcggacgccctgtaacaggtcctggt
aaccgtccactaaaatcactttcacatatgttgaaaggtaaacaaggtcgtttccgtcaa
aatctacttggtaaacgtgttgactattccggtcgttccgttatcgtagtaggtccaaac
ttaaaaatgtaccaatgtggtctacctaaagaaatggctattgagttattcaagcctttc
gttatgaaggaattagtagaacgtggcctagctcataatattaaatctgctaagcgtaaa
atcgaacgtttaaacaacgacgtttgggacgtactagaagatgttattcgtgagcatcca
gtattactaaaccgtgcaccaacgctacaccgtcttggtattcaagcatttgaaccaaca
ctagtagaaggtcgtgctattcgtcttcacccattagtatgtacagcatataacgctgac
ttcgatggtgaccaaatggccgttcacgtaccattgtctgcagaagctcaagctgaggct
cgtcttctaatgcttgctgcgcaaaacattctgaaccctaaagacggtaaacctgttgta
acaccttcacaagatatggtattaggaaactactacttaacgcttgaacgtgaaagtgca
cgtggagaaggtactattttctacggtccaaacgaagtattaatcgcatatgatacaggt
catgtgcatttgcatacacgtattgctattaaagctggttcgttaaataatccaaccttc
acagaggaacaaaataacatgttcctattaacgactgttggtaaagtgatctttaacgaa
atcttgcctgaatcattcccttatatcaatgagccgactgattttaacttagagcaagta
acaccagaaaaatactttgtgaatttaacaattgacgaagaaacactaaaagagcttgaa
tcagatagtgcttataatagccttgatgaaaaagggaaaattgatgcacaacgtacagct
gtattgcgcaagcattttgaatctgtaccagttgtaaatccattccgtaaaaagttctta
ggaaatatcattgctgaagtatttaaacgtttccacattactgaaacatctaaaatgctt
gaccgcatgaaaaacctaggattcaaatattcaactcgtgccggtattactgttggtgta
tctgatatcgtggtattacctgacaaaggtgaaattttagcagtagctcaagaaaaggtt
gataaagttcaagcgcaattccgccgtggtttcatcacagaggatgaacgttatgaccgt
gttatctcaagctggagtgctgcgaaagatgaaatccaagccaagctgatgaagtctctt
gagaaaacaaacccaatcttcatgatgtctgactcaggtgcccgtggtaacgcatctaac
tttacacagttagcaggtatgcgtggtctgatggccaacccggctggtcgtatcatcgaa
ctaccaattaaatcttcattccgtgaaggtttaacagtattagagtacttcatctcaact
cacggtgctcgtaaaggtcttgccgatacagccctaaaaactgccgattcaggttactta
actcgtcgtcttgttgacgttgcacaggatgttattgtgcgcgaagatgactgtggtact
gaccgtggtttaacaattggtgcattaatggaaggcacagagctaatcgaggctctagat
gagcgtattgttggtcgtcatacgaagaaaacaatcgtacatcctgaaactggtgaagtg
attctaaataaagacggtttaatcgatcaagatgtggctcgtgcaattatcgaagctggt
atcgaagaagtgactatccgttcagcatttacatgtaatacaaaacatggcgtatgtaaa
aaatgttacggcatgaacttagcaacaggtgaaaaggttgaggttggagaggcagttggt
attattgccgctcaatcaatcggtgaaccaggtacacagttaacaatgcgtacattccat
acaggtggggttgccggggacgatattacacaaggtcttccacgtatccaggagatcttt
gaagcacgtaatccaaaaggtcaatctgttatttcagagatcgcaggtactgtttcagat
atcacagaaatccgtgaaggcttaaaagaaattacgattcaaggtgacgtagaaactcgt
aagtaccaagcgccttataatgcacgtcttaaagttatcgaaggtgataatgtggagcgt
ggtcaagttttaacagaaggttctatcgatccaaaacaattattaaaagtcaaagacgtt
tcaactgttcaagaatatttattaaaagaagttcaaaaagtataccgtatgcaaggggta
gaaattggagataaacatatcgaggtaatggttcgccaaatgcttcgtaaagtacgtgta
attgaagctggagatacagatttattaccaggttcattactagatatccaccagttcgca
gaggcaaacgcagatgctgttatggatggcaaaaaccctgcaacttgtcgtcctgtaatc
ctaggtattacaaaagcttctcttgaaacagaatcattcttatctgcagcatcattccaa
gaaacaacacgtgtgttaacagatgcagcaattaagggtaaacgtgacgagcttcttgga
ttaaaagagaacgtaattatcggtaaacttgttcctgcaggtactggtatgcaacgttac
cgtcaaatccgcatcgaaaaagatgagcttgacacagaagtcgtttctgctgaatag
DBGET
integrated database retrieval system
