Lonchura striata domestica (Bengalese finch): 110470931
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Entry
110470931 CDS
T05897
Symbol
OPTN
Name
(RefSeq) optineurin isoform X1
KO
K19946
optineurin
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr04137
Mitophagy - animal
lsr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110470931 (OPTN)
04137 Mitophagy - animal
110470931 (OPTN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110470931 (OPTN)
Membrane trafficking [BR:
lsr04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
110470931 (OPTN)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
110470931 (OPTN)
Autophagy
Mitophagy
PINK1-Parkin associated proteins
110470931 (OPTN)
Xenophagy
Cargo receptors
110470931 (OPTN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CC2-LZ
NEMO
zf_C2H2_10
DUF6439
Motif
Other DBs
NCBI-GeneID:
110470931
NCBI-ProteinID:
XP_021386663
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All DBs
Position
1A:6936799..6953208
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AA seq
556 aa
AA seq
DB search
MSSKLKGGPAENGEHSKSKMENGVDSMAPPALNTYTPEEMVQQMKELITENNELKEAMKL
HNQAMKDRYEELSTWREKQKEEREFYELKFKEAKQCLQAKCIENEQLQQQLQSLKEREEG
AEMEGCMAPEKEVKQLKSQVQRLQAEKADLLAIISELQVKLNISAEDSFVEIGMSEGEIN
TIAKEHQENSGEMPSNVAVCIRSKSADESKNLESEELTVSQLLCCLRNETQKREKLEKEL
EDHKERLSKLEKETRSCLESGTQTEQEEESSETVGSEVEALNLQVCALFKELQEAHEKLK
EAELIQKKLQEKCQVLERKSLAAASELEEKQQLIYTIKKLELQVESMQAEVKLEQAKTRE
EKARYNNLQDSYSKVLPELTEAMKTIDEMKRKELDRVDKAVVEQLTAKVNLAEQALAAKQ
LQIDEMKQLIAKQEEDLETMSVLRAQMEVYCSDFHAERAAREKIHEEKEQLAVQLAYLLK
DQQNLEDLGRTSLAEMQSRHGARMPDREHSPHLVQRGTNSQDWPEQRNISIYSCPKCEEI
LPDLDTLQIHVMDCIN
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaagctgaagggcggtcctgctgaaaatggagagcattccaagagtaaaatg
gaaaatggagtggacagcatggctcccccagcccttaacacctacaccccagaagagatg
gtgcagcagatgaaagaattaatcactgagaacaatgagttaaaagaggccatgaagttg
cacaaccaagctatgaaggaccgatacgaggaactttccacatggagagagaagcagaaa
gaagaacgagaattttatgagttaaagtttaaggaggcaaagcagtgcttgcaggccaag
tgcattgaaaatgaacagctacagcagcaacttcagagcttaaaggaaagagaagaagga
gctgaaatggagggctgcatggctcccgagaaggaagtgaagcagctgaagtcccaggtg
cagcggctccaggctgagaaggcagatctgctcgccatcatttcagagctgcaggtcaag
ctgaacatctcagcagaggattcctttgtggagattgggatgagtgaaggggaaataaat
acaattgcaaaggaacatcaagagaatagtggtgaaatgcccagtaatgttgctgtctgc
atcaggagcaaatctgcagatgaatctaagaatttggaatctgaggagctaactgtgagc
cagctgctctgctgccttagaaatgaaactcagaagagggaaaaacttgagaaggagctg
gaggatcacaaagagagactgtcaaagctggagaaggagaccagaagctgcctggagagt
gggacacaaactgaacaggaagaagagagttcagaaactgttggcagtgaagtagaagcc
ctgaatctgcaagtctgtgctctgtttaaagagcttcaggaagcccatgagaagttaaaa
gaagcagaattgattcagaagaaactgcaagaaaaatgccaagtactggaaagaaaaagc
ttggctgctgcatcagaattggaggagaagcagcagctaatatacaccatcaagaagctg
gaacttcaggtagagagcatgcaggcagaggtcaagctggaacaagccaagacacgtgaa
gaaaaggcaagatacaataacctccaggattcatatagcaaagtccttccagaactcacc
gaagcaatgaaaacaattgatgaaatgaaacgcaaagagctggacagagtagacaaagca
gtggtggaacaactgacagcaaaggtgaacttggcagaacaagcccttgctgcaaaacag
ctccagatagatgaaatgaagcagttaattgctaagcaagaggaggaccttgaaactatg
tctgtgctccgtgctcagatggaggtttattgttctgatttccatgctgagagggcagca
agagagaagatccatgaggagaaggagcagttggctgtccagctggcatacctactaaaa
gaccagcaaaatcttgaagatcttggccgaacctctctggcagagatgcagagtcgccac
ggagccaggatgccggatcgggagcactcacctcaccttgtccaaagaggaactaatagt
caagattggccagagcagcggaatatttcaatttattcatgtccgaaatgtgaagaaatt
ctacctgatttggacacactgcagattcacgttatggactgcattaattga
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