KEGG   Lonchura striata (white-rumped munia): 110479761
Entry
110479761         CDS       T05897                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
lsr  Lonchura striata (white-rumped munia)
Pathway
lsr04510  Focal adhesion
lsr04512  ECM-receptor interaction
lsr04518  Integrin signaling
lsr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110479761 (COL6A1)
   04518 Integrin signaling
    110479761 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110479761 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110479761 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lsr04147]
    110479761 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:lsr00536]
    110479761 (COL6A1)
Exosome [BR:lsr04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   110479761 (COL6A1)
Glycosaminoglycan binding proteins [BR:lsr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   110479761 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   110479761 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 DUF1194 VWA_3 vWA-TerF-like
Other DBs
NCBI-GeneID: 110479761
NCBI-ProteinID: XP_021402944
LinkDB
Position
7:complement(1272168..1294011)
AA seq 1023 aa
MRLRDFLLTLLLPASFLWGGSCAQRPETITQVSSAEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNQFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNR
VSSVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREIDVEETINTIIDM
IKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNQGEPGPAGETGDEGSLGED
GPPGERGSNGERGPPGSPGDRGLRGQPGEPGPPGDQGREGPLGPPGDQGEPGPSGPKGYR
GDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTTGFTGAPGQPGDRGDPGING
TKGYVGPKGDEGEAGDPGDDNLTPGPSGIKGAKGHRGREGPPGPPGPMGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFDAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYICQEKKCPDYTCPITFTGPADITLLVDSSTSVG
SKNFETTKKFVKQLSGRFLEASKPTDESVRISVVQYSGRNQQKVEAQFQYNYTVIAKAID
NMEFMNDATDVNSALQFITELYRRSARATAKKRVLVFSDGHSQGITARAIERAVQDAQKA
GIEIYVLAVGSQANEPNIRVLVTGKSADYDVAYGERHLIRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgagactgcgagactttctgctcactctgctgctcccagccagcttcctgtgggggggc
tcatgtgctcagcgcccagaaaccatcacccaagtctcaagtgcagaagactgccctgtg
gacctgttcttcgtcctggacacctcagagagcgttgccctgagggtgaagccctttggg
gacctggttacccaagtgaaagatttcaccaaccagttcattgataagctcacccagagg
tactaccgctgcgaccgcaatctggtgtggaacgcgggagcgctgcactacagcgacgag
gtggtgctcattaagagcctcacgccaatgcccagcgggcagagcgagctgaagaaccgg
gtgtcatctgtcaactacatcgggaagggcacctacaccgactgcgccataaagcgcggc
atcgaggagctgctcatcggtggttcccatcacaaggagaataaatacctaattgtcgtg
actgatggacatcccttggaaggttacaaggagccctgtggaggcctggatgatgctgcc
aatgaagccaaactcctggggatcaaagtgttctctgttgccatctctcccaaccacttg
gaccagcggctgaacattattgccacagatcacgcttaccgccgcaatttcactgccacc
agcctgaagcccacccgggagatcgatgtggaggagaccatcaacaccattatcgacatg
attaaacttaacacggagcaatcgtgctgctccttcgagtgccagcctccccgagggccc
cctggacctcctggtgaccctggccatgagggagaacgaggcaagccaggtcttcccggt
cagaaaggagaggctggagacccaggcaggccgggagacatgggacctgttggctaccaa
ggaatgaaaggtgacaagggaagccgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcaggcgtggaatcgatggcattgatggcatgaagggtgaagctgga
taccctggattacctggctgcaaaggttcacctggattcgatggagctcaaggcccccct
ggaccgaagggagatcctggtgcttttggacccaagggagcaaaaggggagcctgggaat
gacgggaagcctggccgacaggggattcctggcaaccctggagagaagggagctcctggg
aaccagggtgagcctggaccagcaggagagactggtgacgagggttctctaggtgaggat
ggtcctcctggagaacggggcagcaatggcgagagaggacccccgggctcgccaggtgac
cgtgggctgagaggacagccgggagaacccggaccacctggtgaccaagggcgggaagga
cccctcggtccacctggtgaccagggtgagcccggaccctcaggacccaaaggctacagg
ggagatgatggcccccccggcagtgagggcccaaagggattgcctggagcacctgggctg
cctggggaccctgggctgatgggagaaaggggggaggatggtcctcctgggaatggcaca
actggattcacaggtgccccagggcagccaggagacagaggcgaccctggtattaacgga
acaaaaggctatgtcggacctaaaggtgatgaaggggaagctggcgaccctggcgatgat
aacctgacccctggacccagtggcatcaaaggagcaaagggccacaggggacgtgaaggt
cccccaggaccaccaggacccatggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgttcttgctgcgagtgcacctgtggtcctgtcgacctcctgttt
gtgttggacagctcggagagcatcggcctgcagaacttccagattgccaaggacttcatc
atcaaagtcattgaccgcctgagcaaggatgagcgggtcaagtttgacgctggggagtcc
cgtgtgggcgttgtgcagtacagccatgacaacacgcaggagctggtggccatgggggat
gccaacattgacaacattggagcgctcaagcaggcagtcaagaacctgcagtggatcgct
gggggcacctacactggggaggccctgcagttcaccaaggacaacctgctgcggaggttc
acgtccgacaagcgcgtggccatcgtcatcacagacgggcgctccgacaccctgcgggac
cccaccccgctcaactccctgtgcgacgtcaccccggtggtttcccttgggatcggtgac
attttccgaaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
accaggccgggactgtccattcaaagggacaactatgccgagctcctggacgacaccttc
ctgcagaacatcacctcgtacatctgccaagagaaaaaatgtcctgactacacctgtcca
atcaccttcaccgggccagcggacatcacactgctggtggacagctccaccagtgtgggg
agcaagaactttgagaccaccaagaagttcgtgaagcagctgtcagggcggttcctagag
gccagcaagcccaccgacgaatctgtgcgcatctcagtggtgcagtacagcggccggaac
cagcagaaagtggaagctcagttccagtacaactacacagtcattgccaaggccattgac
aacatggagttcatgaatgatgccacggacgtgaactctgctctgcagttcatcacagag
ctgtaccggcgctctgcccgcgccacagccaagaagagggtgctggtgttttctgatgga
cactcccaagggatcactgccagggccattgagagggctgtgcaggacgcacagaaggca
ggcattgagatctacgtgctggcagtgggaagccaagccaatgagcccaacatccgtgtc
ctggtcacagggaagagcgcagattatgatgtggcttacggggagcggcaccttatccgt
gtgcctgactacacctctctgctgcgtggtgtcttctaccaaactgtgtccaggaagata
gctgttgactga

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