Lonchura striata (white-rumped munia): 110484282
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Entry
110484282 CDS
T05897
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04510
Focal adhesion
lsr04512
ECM-receptor interaction
lsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110484282 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110484282 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110484282 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lsr00535
]
110484282 (COL9A2)
Proteoglycans [BR:
lsr00535
]
Extracellular matrix (ECM) proteoglycans
Others
110484282 (COL9A2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110484282
NCBI-ProteinID:
XP_021410494
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Position
23:complement(5065548..5090383)
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AA seq
688 aa
AA seq
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MARVPLARVTLVSPLWLLLQTSCLCLAQLRGPPGEPGPRGPPGPPGVPGADGIDGDKGPA
GSAGSPGVKGEPGAPGPDGAPGKPGIDGLTGAKGEPGPIGRPGVKGQPGLPGPPGLPGPS
LPGPPGLPGQVGLPGEIGVLGPKGDPGPDGPRGPPGPPGKPGLPGHLQGLEGSADFLCPT
SCPPGPKGPQGLQGLKGHRGRPGALGEPGKQGEPGPKGDVGASGEQGVPGPPGPQGLRGY
PGMAGPKGETGPAGYKGMVGSIGAAGRPGREGPKGPPGDAGDKGELGGRGIRGPQGDIGP
KGENGLPGIDGKDGTPGIPGVKGGTGQAGRPGTPGHRGQAGLPGQPGNKGGPGDKGESGP
RGHPGVTGAPGQLGDPGPRGEQGPQGVPGPKGDRGERGLVGPPGEQGRAGPKGEQGPPGI
PGPQGLPGVKGDKGSPGKTGPKGSVGDPGVHGLAGLKGEKGESGEPGPKGQQGIQGDLGF
PGPSGDAGAPGIRGYPGPPGPRGLVGERGVPGMPGPRGTAGRDAGDQHIVDVVLKMLQEQ
LAEVAVSSRRAALGGVGAVGPPGPPGPPGPPGEQGPHGPLGARGVPGILGAAGQVGNVGP
KGKRGEKGERGEVGRGHPGMPGPPGIPGLPGRPGHAEDGKAGERGPPGTPGSPGAPGAAG
PPGLPGLCEAAACLGASAYAAGAKGPPF
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtgtccccctggcccgtgtcaccctcgtgtcgccgctctggctcctgctccaa
acctcctgcctctgcctggcgcagctccgagggccaccaggagaacctggcccacgaggg
ccccccggtcccccaggagtgccgggagccgatggcatcgacggtgacaaaggccctgca
ggatctgccggctccccgggtgtcaagggtgagcctggagctcctggtccggatggagcc
ccagggaagccgggcattgatggcctgacgggagccaaaggggagccaggacccattggc
aggccaggagtcaaaggccagcccggactcccagggccaccagggctccctggtccttca
ctgccaggaccccccgggcttccaggccaggttggacttcctggggagattggagtgctg
ggacccaagggtgaccccggacccgacggcccgaggggtcccccaggtcctccagggaaa
cctggcctcccgggacacctccagggcctggagggcagcgctgatttcctgtgccccacc
agctgccccccaggccccaagggcccccagggactgcagggattgaagggacacagaggc
cgccccggcgccctcggagagcccggcaagcagggagagccgggccccaagggggacgtt
ggtgcctctggagaacaaggagtcccaggccctccgggacctcagggcctcaggggctac
cctggcatggcaggacccaagggtgagacgggccctgctggctacaagggcatggtgggg
agcatcggagccgccgggcggccgggcagggagggccccaagggaccacctggggacgct
ggtgacaagggggagctgggcggccgtggcatcaggggaccccagggtgacatcggcccc
aagggggagaatggtctcccgggcatcgatggcaaggatggcaccccagggatcccagga
gtgaagggtggcacgggacaggcgggacgcccgggaacgccgggacaccggggacaagct
ggattgccgggccagccgggaaacaaaggtggcccgggtgacaagggtgaatcgggtcct
cggggccaccccggtgtcaccggtgccccagggcagcttggcgatcccggacctcggggc
gagcagggcccgcagggtgtccccgggccgaagggtgacaggggcgagcggggcctcgtg
gggccccccggcgagcagggcagagcggggccaaagggtgagcagggcccaccaggcatc
ccaggaccccaaggcttgcctggagtcaaaggagacaagggctctccagggaaaactggc
cccaaaggcagcgttggagatcccggtgtccacggcctggcagggctcaagggagagaag
ggggagtcaggagagccaggacccaagggacagcaaggcatccagggcgacctcggcttc
ccgggcccctcgggggatgcgggagcaccgggaattcggggctatcccggccctcccggc
cctcgggggctggtgggggagcgcggagtgccgggaatgccgggcccgcggggcacagcc
ggccgggacgctggggaccagcacatcgtggacgtggtgctgaagatgctgcaagagcag
ctggcagaggtggccgtgagctccaggagagccgccctgggcggggtcggggccgtggga
ccccccggcccccccggccccccagggccccccggtgagcagggtccccacggccccctg
ggagcccgaggtgtccccggaatcctgggagccgccgggcaggtcgggaatgtcggaccc
aaagggaagagaggagagaagggtgagcggggagaggttggccgcggccacccgggaatg
ccaggtcctccagggatcccaggtctcccgggccgccccgggcacgccgaggatggcaag
gcgggcgagcggggcccgccgggcacgccggggtcaccaggtgcgccgggcgccgcgggg
ccgccggggctgccggggctctgcgaggcggccgcgtgcctgggcgcctcggcctacgcc
gccggcgccaagggccccccgttctga
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