Legionella spiritensis: NCTC12082_02813
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Entry
NCTC12082_02813 CDS
T06800
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lss
Legionella spiritensis
Pathway
lss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12082_02813 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lss03019
]
NCTC12082_02813 (rne)
03009 Ribosome biogenesis [BR:
lss03009
]
NCTC12082_02813 (rne)
Enzymes [BR:
lss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC12082_02813 (rne)
Messenger RNA biogenesis [BR:
lss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12082_02813 (rne)
Ribosome biogenesis [BR:
lss03009
]
Prokaryotic type
rRNA processing factors
NCTC12082_02813 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
VEG92344
LinkDB
All DBs
Position
1:complement(3121234..3123207)
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AA seq
657 aa
AA seq
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MKEKMLINATQTEEIRVALVENGRLYDLDIDYPSEVKKKGSIYKGVVTRREPSLDAVFVE
YGAKRQGFLPLKEIAPEYFNKNPNEFGDNKPPITALIREGQELLIQVDKEERGNKGAALT
TFITLAGCYLVLMPNNPNSGGISRRIEGDDRDELKEALNTLQVPEDMGLIIRTAGVGKNP
DELQNDLDMLCNLWHAIRQAYATQLAPCLIHQEGDVIIRSIRDNLRKSVSEIIIDDQVSY
VKAKQYIEQVKPDFLSNLKLYNSTIPLFNFYQIESQIELAYQREVLLPSGGALVIDRTEA
LVSIDINSAKSTGGSDIETTALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQRD
VENRLKEALKADRARIQVGRISRFGLLEMSRQRLRLSLGETSQEVCPRCEGRGTVRNIQS
HGLSIVRLIEEEALKEKTAEVHVQLPVEMATFIMNEKRDFILNIEKRHGVHILIIANPHL
QSPQYHITRLKEENVGKNKKASYTLIQQPEVAVTRSPQDTVNVDEPAVKLFSAPSAPKTQ
TPSFIKRLWSSLFGDSTMSSSSGSSSSRQEKPMRSHTPHTKHQHGSGEKRSHASSGQRRR
RPSSGQSSQRSHQSSGSGSHGQRKKTHGSQQGAGKVLPIKSDNTKKKEPANRESSDN
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaatgttaataaacgcaacgcaaaccgaagaaatacgggttgcgctggtt
gaaaacggccgtctctatgatctggatattgattatccgtccgaggtcaagaagaagggc
agtatctacaaaggggttgtcacaagacgggaacccagtctggacgcggtattcgttgag
tacggcgccaaacggcaaggatttttaccattaaaggaaatcgcgcccgaatatttcaat
aaaaatccgaatgagttcggcgataataaaccgcccatcaccgccctgattcgtgaaggt
caggaattgcttattcaggttgataaagaagagcgcggcaataaaggtgcggcactaacc
accttcattaccctggccggatgctatctcgtattaatgcctaacaacccgaattcggga
gggatctcgcgccgtatcgagggtgatgaccgcgacgaattgaaagaagccctgaatacc
ttgcaagtacccgaggacatgggcctcatcattcgcacggccggcgtcgggaaaaatccg
gatgaactgcaaaacgatctggacatgctctgtaatctctggcacgccattcgacaagct
tacgcgacgcaattggcaccctgtctgattcatcaggaaggtgatgtcattatccgttcc
attcgtgacaatctgcgtaaatcggttagtgaaatcatcatcgatgatcaagtctcttac
gtcaaagccaagcaatacatagaacaggttaaaccggattttctgtctaacctcaaactc
tacaacagcacgattccgttatttaatttttaccagatagaaagtcagattgaactggct
tatcaacgtgaagtgcttttaccgtcggggggcgctctggtcattgaccggaccgaggct
ctcgtttccattgatattaactccgcgaaatcgaccggcggctcagacatcgaaaccacc
gcgttaaacacaaatcttgaagcagccgatgaaattgcccgacagttacgattacgcgat
ttgggcggccttgtcgtgattgatttcattgatatgagctccagtaaaaatcaacgtgac
gttgaaaaccgcctgaaagaagccttaaaagctgatcgtgcgcgtattcaggtaggacgg
atttcccgttttggtttgctggaaatgtcccgtcagcgtctgagactgtctcttggggaa
acgtctcaggaagtttgtccacgctgtgaaggccggggaacggtacgcaatattcaatca
cacggactatctattgttcgcctgattgaagaagaggctcttaaggaaaaaaccgccgag
gtacacgtccaattacccgtcgaaatggcgacgttcatcatgaatgaaaaacgcgatttc
attttaaacattgaaaagcgccatggcgttcatatcctgattattgcaaacccgcacctc
caatccccgcaataccacatcacccgtttgaaagaggaaaatgtcggtaaaaacaaaaag
gcgagttacaccttgattcagcaaccggaagtggccgtcacacgctcaccacaggatact
gttaacgttgatgaaccggcggtcaaactgttctccgccccatccgcgcccaaaacgcaa
acccccagttttatcaaacgactatggagcagtcttttcggggattcaaccatgtcttcc
tcttccggcagtagcagcagccggcaggaaaagccaatgcgcagccacacgcctcatacc
aaacatcagcatggtagcggagaaaaacgttcgcatgcctcatcaggccagcgccgacga
cgaccctcatccggtcaatcatcacaacggagccatcaatcctcgggaagtggcagccat
ggccagcgcaagaaaacgcatggcagccagcaaggcgcaggaaaagtcctgcccataaag
tcagataatacaaaaaaaaaagagccagctaacagagaatccagtgacaactga
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